View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_106 (Length: 255)
Name: NF8206A_low_106
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 50968739 - 50968942
Alignment:
| Q |
6 |
acaatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataacttgtaat |
105 |
Q |
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| T |
50968739 |
acaatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataacttgtaat |
50968838 |
T |
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| Q |
106 |
cgacggaataaaacatatgatatatgacgcaaccatcctcgacgctgcatcgagttgtttcctgaaagtggagattacaaatgagatttagcatggatca |
205 |
Q |
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| T |
50968839 |
caacggaataaaac-----atatatgacacaaccatcctcgacgctgcattgagttgtgtcctgaaagtggagattacaaatgagatttagcatggatca |
50968933 |
T |
|
| Q |
206 |
ggcgtaaac |
214 |
Q |
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| T |
50968934 |
ggcgtaaac |
50968942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 50970885 - 50970943
Alignment:
| Q |
40 |
catgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
98 |
Q |
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| T |
50970885 |
catgagttgttaattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
50970943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 11625914 - 11625880
Alignment:
| Q |
52 |
attaatcaaggaaattacactcgatgaaataataa |
86 |
Q |
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| T |
11625914 |
attaatcaaggaaattacactcgatgaaataataa |
11625880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 21185281 - 21185315
Alignment:
| Q |
52 |
attaatcaaggaaattacactcgatgaaataataa |
86 |
Q |
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| T |
21185281 |
attaatcaaggaaatcacactcgatgaaataataa |
21185315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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