View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_112 (Length: 251)

Name: NF8206A_low_112
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_112
NF8206A_low_112
[»] chr5 (9 HSPs)
chr5 (18-241)||(26099226-26099449)
chr5 (27-76)||(25224814-25224863)
chr5 (27-76)||(25288970-25289019)
chr5 (132-220)||(25224928-25225016)
chr5 (132-220)||(25289084-25289172)
chr5 (132-220)||(25728232-25728320)
chr5 (27-76)||(25728385-25728434)
chr5 (141-214)||(25222582-25222655)
chr5 (141-214)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (132-220)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 26099449 - 26099226
Alignment:
Q  18 ggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttc 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  26099449 ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc 26099350  T
Q  118 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  26099349 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt 26099250  T
Q  218 aacggaaggccatggccatgaaca 241  Q
    || ||| ||||||||||| |||||    
T  26099249 aatggatggccatggccacgaaca 26099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
Q  27 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 76  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25224814 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
Q  27 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 76  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25288970 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25289019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
Q  132 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 220  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25224928 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25225016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
Q  132 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 220  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25289084 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25289172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
Q  132 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 220  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25728320 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25728232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
Q  27 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 76  Q
    ||||||||||| ||||| || |||||||||||||||||||||| ||||||    
T  25728434 gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca 25728385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
Q  141 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 214  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25222655 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25222582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
Q  141 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 214  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25286811 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25286738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
Q  132 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 220  Q
    |||||| | |||||||||||  |||| |||||||||| ||||||| || | |||||||| || |||||||| |||||||||||||||||    
T  25618044 tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac 25618132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University