View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_116 (Length: 251)
Name: NF8206A_low_116
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34955908 - 34955671
Alignment:
| Q |
1 |
acagcagaaataaatgatataatatacggcatatgacttcctattatttttctct--gtattttaaatattatgccgaaacgtaagctgttttgcactct |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34955908 |
acagcagaaataaatgatataatatacggcatatgacttcctattatttttctctctgtattttaaatattatgccgaaacataagctgttttgcactct |
34955809 |
T |
|
| Q |
99 |
gcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccatacaccatttatctttt |
198 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34955808 |
gcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccgtacaccatttatctttt |
34955709 |
T |
|
| Q |
199 |
ggaaagaaattgtcacctaagcttatgagtgatgtcca |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
34955708 |
ggaaagaaattgtcacctaagcttatgagtgatgtcca |
34955671 |
T |
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Back To:
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 31391666 - 31391785
Alignment:
| Q |
98 |
tgcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccatacaccatttatcttt |
197 |
Q |
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||||||||||||||| |||| | ||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||| |
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| T |
31391666 |
tgcaggttccaggaagcttggttgtctcagctagatcagatgcacattcatttgatgcttctcaaatgaacatgtcacatgtcatcaaccatctatcttt |
31391765 |
T |
|
| Q |
198 |
tggaaagaaattgtcaccta |
217 |
Q |
| |
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|||||| ||| || |||||| |
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| T |
31391766 |
tggaaaaaaagtgacaccta |
31391785 |
T |
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