View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_122 (Length: 250)

Name: NF8206A_low_122
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_122
NF8206A_low_122
[»] chr4 (5 HSPs)
chr4 (12-235)||(24666621-24666844)
chr4 (12-242)||(34941551-34941782)
chr4 (12-243)||(18363426-18363653)
chr4 (12-243)||(36599275-36599502)
chr4 (59-134)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (12-131)||(26240615-26240735)
chr1 (151-242)||(26240779-26240870)
[»] chr3 (2 HSPs)
chr3 (59-243)||(53242714-53242900)
chr3 (36-111)||(43479315-43479391)
[»] chr2 (2 HSPs)
chr2 (72-235)||(19697413-19697568)
chr2 (185-235)||(13265597-13265647)
[»] chr8 (1 HSPs)
chr8 (122-226)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
Q  12 agttatcaacaccgagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctggattta 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24666621 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 24666720  T
Q  112 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatctaa 211  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||||| ||||||| ||||||||| |    
T  24666721 cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca 24666820  T
Q  212 accattgattcaatcaaacggtat 235  Q
    ||||||||||||||||||||||||    
T  24666821 accattgattcaatcaaacggtat 24666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
Q  12 agttatcaacaccgagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctggattt 110  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34941782 agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 34941683  T
Q  111 acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatcta 210  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||||| ||| |||||| |||||||| |||||||||     
T  34941682 acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc 34941583  T
Q  211 aaccattgattcaatcaaacggtatattcttc 242  Q
    |||| |||||||||||||||||||| ||||||    
T  34941582 aaccgttgattcaatcaaacggtattttcttc 34941551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
Q  12 agttatcaacaccgagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctggattta 111  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||| ||||||    
T  18363426 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 18363523  T
Q  112 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatctaa 211  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||| ||||||||||||||| ||||||||| |    
T  18363524 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 18363621  T
Q  212 accattgattcaatcaaacggtatattcttcg 243  Q
    ||||||||||||||| || ||||| |||||||    
T  18363622 accattgattcaatcgaatggtattttcttcg 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
Q  12 agttatcaacaccgagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctggattta 111  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||| ||||||    
T  36599502 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 36599405  T
Q  112 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatctaa 211  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||| ||||||||||||||| ||||||||| |    
T  36599404 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 36599307  T
Q  212 accattgattcaatcaaacggtatattcttcg 243  Q
    ||||||||||||||| || ||||| |||||||    
T  36599306 accattgattcaatcgaatggtattttcttcg 36599275  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  59 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctggatttacagatttcagaggagttgaaaag 134  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | |||||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
Q  12 agttatcaacaccgagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctggattt 110  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26240615 agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 26240714  T
Q  111 acagatttcagaggagttgaa 131  Q
    ||| ||||||  |||||||||    
T  26240715 acatatttcaagggagttgaa 26240735  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
Q  151 agggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttc 242  Q
    ||||||||||||  ||||||||||||||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc 26240870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
Q  59 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctggatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca 157  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| | ||||||||||||| |   |||||||| |||||||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  158 agatttaatgttaaaatgtctatatgctctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttcg 243  Q
    | |||  | || |||||||||| ||| |||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg 53242714  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 43479315 - 43479391
Alignment:
Q  36 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctggattta 111  Q
    |||| ||||||| || | |||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattta 43479391  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 19697568 - 19697413
Alignment:
Q  72 aatggatgtagatgttttctgcaagcatcttctggatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa 171  Q
    ||||||||||||||||||| |||||||||||||  ||||       | || ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  172 aatgtctatatgctctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 235  Q
    |||||||| ||| |||||||||| |||| || |||||| || ||||||||||||||||| ||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtat 19697413  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 13265647 - 13265597
Alignment:
Q  185 tctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 235  Q
    ||||| ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  13265647 tctcatttttatttttaataattctaaaccattgatttaatccaacggtat 13265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
Q  122 aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgctctcaattttatttttaataaatctaaaccattgatt 221  Q
    |||||||||| | ||||| ||||||||||||||||||||||  |||| ||||||| || ||| |||||||||  |||| |||||||||  |||||||| |    
T  32566462 aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat 32566558  T
Q  222 caatc 226  Q
    |||||    
T  32566559 caatc 32566563  T

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