View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_135 (Length: 245)
Name: NF8206A_low_135
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 17734546 - 17734318
Alignment:
| Q |
4 |
gagtatggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtg |
103 |
Q |
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| T |
17734546 |
gagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaacgttggtg |
17734447 |
T |
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| Q |
104 |
aggttggtcagtgattttccgatgagattctgctctgatgttcttcttttttgaggtagcattgttgttgttcttcttctttgcattctaagacggtttt |
203 |
Q |
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| T |
17734446 |
aggtttgtcagtgattttccgatgagattctgctctgatgttcttcttttttgagggagcattgttgttgttcttcttctttgaattctaagacggtttt |
17734347 |
T |
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| Q |
204 |
caagacctaattctaagacggttttgatg |
232 |
Q |
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| T |
17734346 |
caagacctaattctaagacggttttgatg |
17734318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 17743786 - 17743606
Alignment:
| Q |
4 |
gagtatggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtg |
103 |
Q |
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| T |
17743786 |
gagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaacgttggtg |
17743687 |
T |
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| Q |
104 |
aggttggtcagtgattttccgatgagattctgctctgatgttcttcttttttgaggtagcattgttgttgttcttcttctt |
184 |
Q |
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| T |
17743686 |
aatttggtgagtgattttccgatgagattcttctttgttctttttcttttttgaggaggcattgttgttcttcttcttctt |
17743606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 16729429 - 16729303
Alignment:
| Q |
10 |
ggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgaggttg |
109 |
Q |
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| T |
16729429 |
ggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggttt |
16729330 |
T |
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| Q |
110 |
gtcagtgattttccgatgagattctgc |
136 |
Q |
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| T |
16729329 |
gtgagtgattttctgatgagattctgc |
16729303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17706501 - 17706375
Alignment:
| Q |
10 |
ggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgaggttg |
109 |
Q |
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| T |
17706501 |
ggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggttt |
17706402 |
T |
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| Q |
110 |
gtcagtgattttccgatgagattctgc |
136 |
Q |
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| T |
17706401 |
gtgagtgattttctgatgagattctgc |
17706375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17716489 - 17716363
Alignment:
| Q |
10 |
ggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgaggttg |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
17716489 |
ggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggttt |
17716390 |
T |
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| Q |
110 |
gtcagtgattttccgatgagattctgc |
136 |
Q |
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| T |
17716389 |
gtgagtgattttctgatgagattctgc |
17716363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 16720556 - 16720430
Alignment:
| Q |
10 |
ggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgaggttg |
109 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
16720556 |
ggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaatgttggttaggttt |
16720457 |
T |
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| Q |
110 |
gtcagtgattttccgatgagattctgc |
136 |
Q |
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|| | |||||||||||||||||||||| |
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| T |
16720456 |
gtaaatgattttccgatgagattctgc |
16720430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17697570 - 17697444
Alignment:
| Q |
10 |
ggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgaggttg |
109 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
17697570 |
ggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaatgttggttaggttt |
17697471 |
T |
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| Q |
110 |
gtcagtgattttccgatgagattctgc |
136 |
Q |
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|| | |||||||||||||||||||||| |
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| T |
17697470 |
gtaaatgattttccgatgagattctgc |
17697444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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