View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_136 (Length: 244)
Name: NF8206A_low_136
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_136 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 35923040 - 35922817
Alignment:
| Q |
21 |
ctatggtcccagcacttataataactattggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtaatcgagatggagccaaggctca |
120 |
Q |
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| T |
35923040 |
ctatggtcccagcacttataataactattggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtgatcgagatggagccaaggttca |
35922941 |
T |
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| Q |
121 |
tcttaagcgaatccgtggagtggaagatgttgatgaagagttcaatgatcttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaat |
220 |
Q |
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| T |
35922940 |
tcttaagcgaatccgtggagtggaagatgttgatgaagagttcaatgaccttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaat |
35922841 |
T |
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| Q |
221 |
ttgttgcaaaggaaatataggcct |
244 |
Q |
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| T |
35922840 |
ttgttgcaaaggaaatataggcct |
35922817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 36202018 - 36202237
Alignment:
| Q |
21 |
ctatggtcccagcacttataataactattggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtaatcgagatggagccaaggctca |
120 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| || ||||| |
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| T |
36202018 |
ctatggtcccagcacttataataacaattggatcattagtccttcccgacacccctaactcaatgatcgaacgtggtgatcgcgatggagctaaagctca |
36202117 |
T |
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| Q |
121 |
tcttaagcgaatccgtggagtggaagatgttgatgaagagttcaatgatcttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaat |
220 |
Q |
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| T |
36202118 |
acttaagagaattcgcggtattgaagatgttgatgaagagtttaatgaccttgtagcagctagtgaggcctcaatgcaagttgaaaacccttggagaaat |
36202217 |
T |
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| Q |
221 |
ttgttgcaaaggaaatatag |
240 |
Q |
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| T |
36202218 |
ttgttgcagaggaaatatag |
36202237 |
T |
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