View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8206A_low_139 (Length: 244)
Name: NF8206A_low_139
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_139 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41311257 - 41311027
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311257 |
gttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
41311158 |
T |
|
| Q |
101 |
gctctcccagatggtttttatagtgattactcaactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311157 |
gctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
41311058 |
T |
|
| Q |
201 |
ttaagatatgggtgatgcaagaatacacaat |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
41311057 |
ttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43164935 - 43164710
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| | |
|
|
| T |
43164935 |
gttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagatt |
43164836 |
T |
|
| Q |
101 |
gctctcccagatggtttttatagtgattactcaactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
200 |
Q |
| |
|
||||| ||||||| |||||||||||||| || | | ||||||||||| ||||| || || ||||||| || |||||||||||||||||| |||||| |
|
|
| T |
43164835 |
gctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacac |
43164736 |
T |
|
| Q |
201 |
ttaagatatgggtgatgcaagaatac |
226 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
43164735 |
ttaagatatgggtaatgcaagaatac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30165670 - 30165883
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
100 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
30165670 |
gttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagata |
30165769 |
T |
|
| Q |
101 |
gctctcccagatggtttttatagtgattactcaactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
200 |
Q |
| |
|
||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |
|
|
| T |
30165770 |
gctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacag |
30165857 |
T |
|
| Q |
201 |
ttaagatatgggtgatgcaagaatac |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30165858 |
ttaagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
13 |
ttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
112 |
Q |
| |
|
||||||||||| |||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
|
|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
113 |
ggtttttatagtgatt |
128 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30125211 - 30124981
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
100 |
Q |
| |
|
|||||||||||| ||||||||| |||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | |
|
|
| T |
30125211 |
gttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaata |
30125112 |
T |
|
| Q |
101 |
gctctcccagatggtttttatagtgattactcaactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
200 |
Q |
| |
|
||||| ||| ||| |||||||| |||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |
|
|
| T |
30125111 |
gctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcag |
30125012 |
T |
|
| Q |
201 |
ttaagatatgggtgatgcaagaatacacaat |
231 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| |
|
|
| T |
30125011 |
ttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30131165 - 30131068
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
98 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30131165 |
gttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30120165 - 30120068
Alignment:
| Q |
1 |
gttcttgaatggttctattcatttgctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
98 |
Q |
| |
|
|||||||||||| ||||||||| | || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
30120165 |
gttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
196 |
tacacttaagatatgggtgatgcaagaatacaca |
229 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
52 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University