View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_14 (Length: 465)
Name: NF8206A_low_14
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 7617528 - 7617833
Alignment:
| Q |
21 |
gttagttaatttattttgaagtataaactaaatataattagcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctactttccggnnnnnn |
120 |
Q |
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| T |
7617528 |
gttagttaatttattttgaagtataaactaaatataattagcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctactttccggtttttt |
7617627 |
T |
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| Q |
121 |
nnncactttaaagacagaacagaagcttataaaagcacaccctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcagcta |
220 |
Q |
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| T |
7617628 |
t--cactttaaagacagaacagaagcttataaaagcacaccctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcaacta |
7617725 |
T |
|
| Q |
221 |
cacataacaattaccannnnnnnngttttgctttgaacaacaaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactc |
320 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7617726 |
cacataacaattaccattttttttgttttgctttgaacaacaaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactc |
7617825 |
T |
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| Q |
321 |
agatataa |
328 |
Q |
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|||||||| |
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| T |
7617826 |
agatataa |
7617833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 7617891 - 7617964
Alignment:
| Q |
386 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactatt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7617891 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactatt |
7617964 |
T |
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