View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_147 (Length: 241)
Name: NF8206A_low_147
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_147 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 34444262 - 34444044
Alignment:
| Q |
3 |
catctccaacaatatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatct |
102 |
Q |
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| T |
34444262 |
catctccactaacatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatct |
34444163 |
T |
|
| Q |
103 |
accacttccattaaatgaaccaatgtcccatcttttgaaaagtaacactgaagcagaatcaccgaactcagttttataaatataactatcaactggtcta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34444162 |
accacttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtcta |
34444063 |
T |
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| Q |
203 |
agttcaaacgcggagataa |
221 |
Q |
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||||| ||||||||||||| |
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| T |
34444062 |
agttccaacgcggagataa |
34444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 34437515 - 34437297
Alignment:
| Q |
3 |
catctccaacaatatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatct |
102 |
Q |
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|||||||| || ||| ||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| |
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| T |
34437515 |
catctccactaacatctatttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatct |
34437416 |
T |
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| Q |
103 |
accacttccattaaatgaaccaatgtcccatcttttgaaaagtaacactgaagcagaatcaccgaactcagttttataaatataactatcaactggtcta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||| ||||||| |
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| T |
34437415 |
accacttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtcta |
34437316 |
T |
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| Q |
203 |
agttcaaacgcggagataa |
221 |
Q |
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||||| || || ||||||| |
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| T |
34437315 |
agttccaatgctgagataa |
34437297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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