View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_150 (Length: 239)

Name: NF8206A_low_150
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_150
NF8206A_low_150
[»] chr3 (20 HSPs)
chr3 (23-220)||(41985652-41985852)
chr3 (23-218)||(41980878-41981073)
chr3 (23-101)||(9494822-9494900)
chr3 (23-115)||(9329860-9329952)
chr3 (36-115)||(9695616-9695695)
chr3 (23-220)||(9448338-9448535)
chr3 (23-115)||(9336564-9336656)
chr3 (23-115)||(9343869-9343961)
chr3 (25-115)||(9407392-9407482)
chr3 (23-112)||(9655360-9655449)
chr3 (43-112)||(9646367-9646436)
chr3 (40-115)||(9416614-9416689)
chr3 (25-112)||(9425599-9425686)
chr3 (25-115)||(9617463-9617553)
chr3 (43-107)||(9626488-9626552)
chr3 (67-115)||(9686751-9686799)
chr3 (43-121)||(9756424-9756502)
chr3 (23-100)||(9340695-9340772)
chr3 (25-115)||(9397811-9397903)
chr3 (42-115)||(9432939-9433012)
[»] chr8 (2 HSPs)
chr8 (55-220)||(13170579-13170744)
chr8 (32-220)||(44688680-44688868)
[»] chr1 (7 HSPs)
chr1 (23-220)||(18991228-18991422)
chr1 (36-92)||(8814385-8814441)
chr1 (36-97)||(235250-235311)
chr1 (36-97)||(251412-251473)
chr1 (26-110)||(4428658-4428742)
chr1 (36-90)||(246904-246958)
chr1 (36-92)||(231618-231674)
[»] chr2 (1 HSPs)
chr2 (23-112)||(20694304-20694393)
[»] chr6 (7 HSPs)
chr6 (37-115)||(7041534-7041612)
chr6 (35-97)||(7046875-7046937)
chr6 (36-97)||(7025793-7025854)
chr6 (36-97)||(7029850-7029911)
chr6 (36-97)||(9170854-9170915)
chr6 (36-95)||(9159515-9159574)
chr6 (36-97)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (40-115)||(450111-450186)
chr7 (40-102)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (48-101)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 41985652 - 41985852
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985652 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaa 41985751  T
Q  123 accatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctcca 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  41985752 accatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctcca 41985851  T
Q  220 t 220  Q
    |    
T  41985852 t 41985852  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 41980878 - 41981073
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || ||    
T  41980878 acgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaa 41980977  T
Q  123 accatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 218  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41980978 accatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 9494900 - 9494822
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 101  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || ||||||||||||||||    
T  9494900 acgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 9329860 - 9329952
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    ||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329860 acgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 9695695 - 9695616
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695695 ccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 9448338 - 9448535
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaa 122  Q
    |||||||  ||||||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||||||||| |||  | |||||||||| | |||     
T  9448338 acgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatcaacccttat 9448437  T
Q  123 accatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 220  Q
    | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || || | |||||| |||||||||||||    
T  9448438 agcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaactaagaattttatgtcccctccat 9448535  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 9336564 - 9336656
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    ||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336564 acgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 9343869 - 9343961
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| ||||||||||  | ||||||||||    
T  9343869 acgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 9407392 - 9407482
Alignment:
Q  25 gaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407392 gaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 9655449 - 9655360
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 112  Q
    |||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9655449 acgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9655360  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 9646436 - 9646367
Alignment:
Q  43 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 112  Q
    |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9646436 aacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9646367  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 9416614 - 9416689
Alignment:
Q  40 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416614 aagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 9425599 - 9425686
Alignment:
Q  25 gaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 112  Q
    |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425599 gaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 9617553 - 9617463
Alignment:
Q  25 gaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617553 gaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 9626552 - 9626488
Alignment:
Q  43 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 107  Q
    |||||||| |||||||||||| ||  ||| || |||||||||||||||||||||| || ||||||    
T  9626552 aacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  67 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 9756424 - 9756502
Alignment:
Q  43 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagcttta 121  Q
    |||||||| |||||||| ||| || |||||||||||||  | ||||| ||||||||||| ||  ||||||||| |||||    
T  9756424 aacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaatcttta 9756502  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 9340695 - 9340772
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 100  Q
    |||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340695 acgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 9397811 - 9397903
Alignment:
Q  25 gaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397811 gaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 9432939 - 9433012
Alignment:
Q  42 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432939 gaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 55 - 220
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  55 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 154  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  155 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 220  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 44688868 - 44688680
Alignment:
Q  32 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 131  Q
    |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||    
T  44688868 cattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttc 44688769  T
Q  132 accagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 220  Q
    ||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688768 acccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 18991228 - 18991422
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaa 122  Q
    |||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || ||||| |  || ||||     
T  18991228 acgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaacaccttcagttttag 18991324  T
Q  123 accatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 220  Q
    ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991325 acctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 8814441 - 8814385
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 92  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 235250 - 235311
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235250 ccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 251473 - 251412
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 4428658 - 4428742
Alignment:
Q  26 aacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 110  Q
    |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428658 aacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 246904 - 246958
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 90  Q
    |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246904 ccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 231618 - 231674
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 92  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 20694393 - 20694304
Alignment:
Q  23 acgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 112  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694393 acgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 7041534 - 7041612
Alignment:
Q  37 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041534 cccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 7046875 - 7046937
Alignment:
Q  35 tccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 95  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  36 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 97  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 450186 - 450111
Alignment:
Q  40 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 115  Q
    |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 3695731 - 3695792
Alignment:
Q  40 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagt 102  Q
    |||||||||||||||||||||||||||  ||||||||  || ||||||| |||||||| ||||    
T  3695731 aagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctcattaagt 3695792  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 18571160 - 18571213
Alignment:
Q  48 aactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 101  Q
    |||| ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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