View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_152 (Length: 239)
Name: NF8206A_low_152
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_152 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 32724917 - 32724718
Alignment:
| Q |
21 |
gacataagaaccatacgtttttctctgaaccgtgaaatgctgagaaggaatcttttaacatccactaccttcaacccctttctaaaaagcccgttaaccc |
120 |
Q |
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| T |
32724917 |
gacataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaagcctgttaaccc |
32724818 |
T |
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| Q |
121 |
aaataacttgtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgtttc |
220 |
Q |
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| T |
32724817 |
aaataacttatgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccataatctctctatcattcttgtcttctcatgtttc |
32724718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 32723441 - 32723264
Alignment:
| Q |
44 |
tctgaaccgtgaaatgctgagaaggaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataacttgtgtcaccattg |
141 |
Q |
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| T |
32723441 |
tctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataacttgtgtcaccatta |
32723342 |
T |
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| Q |
142 |
atacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgttt |
219 |
Q |
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||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
32723341 |
atataaaacaaaaattactgtttctctactaaacctgtaaacccatcatctctctatctttcctgtcttctcatgttt |
32723264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 4002079 - 4001942
Alignment:
| Q |
18 |
ctagacataagaaccatacgtttttctctgaaccgtgaaatgctgagaaggaatcttttaacatccactaccttcaacccctttctaaaaagcccgttaa |
117 |
Q |
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|||| |||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||| |||||| |||| | ||||| |
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| T |
4002079 |
ctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaagaatcttttaacatccactaccttcaacatctttctcaaaaacatgttaa |
4001980 |
T |
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| Q |
118 |
cccaaataacttgtgtcaccattgatacaaaacaaaaa |
155 |
Q |
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||||||||||||| || |||||||||| |||| ||||| |
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| T |
4001979 |
cccaaataacttgcgttaccattgataaaaaaaaaaaa |
4001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 15720167 - 15719989
Alignment:
| Q |
44 |
tctgaaccgtgaaatgctgagaaggaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataacttgtgtcaccattg |
141 |
Q |
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| T |
15720167 |
tctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataacttgtgtcaccatta |
15720068 |
T |
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| Q |
142 |
atacaaaacaaaaa-ttactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatgttt |
219 |
Q |
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|||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
15720067 |
atacaaaacaaaaaattactctttctctactaaacctgtacacccatcatctctctatctttcttgtcttctcatgttt |
15719989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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