View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_16 (Length: 449)
Name: NF8206A_low_16
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 23332772 - 23333151
Alignment:
| Q |
1 |
gatctaccttatagaaacccttcagctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttgg |
100 |
Q |
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| T |
23332772 |
gatctaccttatagaaacccttcagctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttgg |
23332871 |
T |
|
| Q |
101 |
atcacgcaacatgacataatcatcaacatgcacgccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332872 |
atcacgcaacatgacataatcatcaacatgcaaaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgac |
23332971 |
T |
|
| Q |
201 |
acggttaggtccaatcaacataccaaaacagtgcaatgcccactaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaactt |
300 |
Q |
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| T |
23332972 |
acggttagttccaatcaacataccaaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaactt |
23333071 |
T |
|
| Q |
301 |
gacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgtagcatta |
380 |
Q |
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| T |
23333072 |
gacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcatagcatta |
23333151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 23333270 - 23333195
Alignment:
| Q |
374 |
agcattaattaactcaaaaaggtttgcgtggaaaatggatgtttgttcttctctattttgctggccacaagttgtt |
449 |
Q |
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| T |
23333270 |
agcattaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgtt |
23333195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
51 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacgccatattcctt |
145 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| ||||||||||| |
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| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
51 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
118 |
Q |
| |
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||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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