View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8206A_low_162 (Length: 233)
Name: NF8206A_low_162
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_162 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 24616963 - 24617158
Alignment:
| Q |
20 |
ataacaatccatttcatat----attccaagtgcaccaaccgaacttcctttgaacgacataaaaatcacttggtttattgatcgagtctatttaataaa |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616963 |
ataacaatccatttcatatatatattccaagtacaccaactgaacttcctttgaacgacataaaaatcacttggtttattgatcgagtctatttaataaa |
24617062 |
T |
|
| Q |
116 |
gtgtacaagtgtggtatttatagataaaactagtcatattggccaagatattgtggcttacaaaatctatccttgttcagctattttcgcaaataa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24617063 |
gtgtacaagtgtggtatttatagataaaactagtcatattggccaagatattgtggcttacaaaatccatccttgttcagctattttcgcaaataa |
24617158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 167144 - 167231
Alignment:
| Q |
117 |
tgtacaagtgtggtatttata-gataaaactagtcatattggccaagatattgtggcttacaaaatctatccttgttcagctattttc |
203 |
Q |
| |
|
|||||||||||| | |||||| || ||||||||||||||||||||| |||| ||||| || |||||| |||||||| ||||||||| |
|
|
| T |
167144 |
tgtacaagtgtgatgtttataagaaaaaactagtcatattggccaaaatatcgtggcctatccaatctaaccttgttcggctattttc |
167231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University