View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_164 (Length: 232)

Name: NF8206A_low_164
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_164
NF8206A_low_164
[»] chr8 (8 HSPs)
chr8 (31-190)||(28846502-28846661)
chr8 (39-188)||(27190660-27190809)
chr8 (37-188)||(13152531-13152682)
chr8 (31-188)||(14446714-14446870)
chr8 (38-181)||(24333602-24333745)
chr8 (150-188)||(16532768-16532806)
chr8 (113-188)||(9256355-9256427)
chr8 (36-74)||(9256307-9256345)
[»] chr4 (6 HSPs)
chr4 (31-188)||(31944497-31944654)
chr4 (124-188)||(4325387-4325450)
chr4 (150-188)||(12211363-12211401)
chr4 (37-85)||(24104671-24104719)
chr4 (67-129)||(24104597-24104659)
chr4 (38-80)||(51379529-51379571)
[»] chr3 (5 HSPs)
chr3 (38-187)||(3857014-3857163)
chr3 (38-188)||(51261867-51262017)
chr3 (57-188)||(15667880-15668011)
chr3 (150-188)||(37382006-37382044)
chr3 (150-188)||(43137127-43137165)
[»] chr2 (2 HSPs)
chr2 (31-188)||(12539455-12539612)
chr2 (31-188)||(34317604-34317761)
[»] chr5 (5 HSPs)
chr5 (31-181)||(8785664-8785813)
chr5 (31-188)||(3055362-3055520)
chr5 (31-177)||(27168943-27169089)
chr5 (37-188)||(11852602-11852753)
chr5 (95-188)||(23244707-23244800)
[»] chr7 (9 HSPs)
chr7 (31-188)||(43727877-43728034)
chr7 (31-188)||(9230282-9230439)
chr7 (97-181)||(23804642-23804726)
chr7 (36-155)||(24276397-24276517)
chr7 (101-188)||(23180022-23180109)
chr7 (31-152)||(5287949-5288070)
chr7 (31-166)||(25024464-25024599)
chr7 (134-188)||(8638598-8638652)
chr7 (150-188)||(45197644-45197682)
[»] chr1 (10 HSPs)
chr1 (39-188)||(48606749-48606898)
chr1 (31-188)||(30559142-30559299)
chr1 (31-188)||(9637003-9637159)
chr1 (31-188)||(14498779-14498935)
chr1 (110-188)||(52753954-52754032)
chr1 (135-188)||(25017371-25017424)
chr1 (134-181)||(32379996-32380043)
chr1 (135-188)||(40864856-40864909)
chr1 (57-124)||(30054772-30054839)
chr1 (31-79)||(52754030-52754078)
[»] scaffold0178 (1 HSPs)
scaffold0178 (37-188)||(17627-17778)
[»] chr6 (4 HSPs)
chr6 (31-188)||(12180662-12180819)
chr6 (31-181)||(11970841-11970991)
chr6 (110-152)||(8035438-8035480)
chr6 (38-80)||(8035493-8035535)
[»] scaffold0002 (1 HSPs)
scaffold0002 (63-188)||(435492-435617)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 28846502 - 28846661
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28846502 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccctgtcaataagctagtaaaataatcttataagtc 28846601  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgatgt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28846602 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt 28846661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 27190660 - 27190809
Alignment:
Q  39 gtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaa 138  Q
    ||||||||||||||| | |||||||||||||||||| ||||| |||||||  ||| || |||||| |||||||||||||||||||||||| ||| |||||    
T  27190660 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaa 27190759  T
Q  139 agaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  27190760 agaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgat 27190809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 13152682 - 13152531
Alignment:
Q  37 gggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 136  Q
    ||||||||||||||||| | |||||||||||||||||| ||||  |||||||  ||| || |||||| |||||||||||||||||||||||| |||||||    
T  13152682 gggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaagccatgtcaaaaagctagtaaaataatcttataagcccgtgag 13152583  T
Q  137 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  13152582 aaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgat 13152531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 14446714 - 14446870
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    ||||| |||| |||||||||||| | |||||||||||||||||| ||||| ||||||   |||  |||||||||||||||||||||||||||||||||||    
T  14446714 aatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaagtcctgtcaataagctagtaaaataatcttataagtc 14446813  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
     | ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  14446814 tgcgagaaagaattgttacc-acaagatcaacgatttgtggttcaatgacttgatgat 14446870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 24333602 - 24333745
Alignment:
Q  38 ggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 137  Q
    ||||||||||| |||| | ||||||||| |||||||| ||||| ||| |||  |||  | ||||||||||||||||||||||||||||||| ||||||||    
T  24333602 ggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaagtcttgtcaataagctagtaaaataatcttataagcccgtgaga 24333701  T
Q  138 aagaattgttaccaacaagatcaacgatgtgtggttcaatgact 181  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  24333702 aagaattgttaccaacaagatcaacgatgtatgattcaatgact 24333745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 16532806 - 16532768
Alignment:
Q  150 caacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgat 16532768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 9256355 - 9256427
Alignment:
Q  113 aaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||  ||||||||||||   ||||||| | |||||| ||||||||||| ||||||| ||||||    
T  9256355 aaaataatcttataagcacgtgagaaagaa---ttaccaatatgatcaatgatgtgtggtttaatgacttgatgat 9256427  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 9256307 - 9256345
Alignment:
Q  36 cgggtgcaccaaagctataaacaacatcaacaaaagttg 74  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  9256307 cgggtgcaccaaagctattaccaacatcaacaaaagttg 9256345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 31944497 - 31944654
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| ||||||||  |||||||| | |||||| ||||||||||| ||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||      
T  31944497 aatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagttatcaagccctgccaataagctagtaaaataatcttataagct 31944596  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31944597 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 31944654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 4325387 - 4325450
Alignment:
Q  124 ataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  4325387 ataagcccgtaagaaagaat-gttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 4325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 12211401 - 12211363
Alignment:
Q  150 caacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgat 12211363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 24104719 - 24104671
Alignment:
Q  37 gggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctacca 85  Q
    ||||||||||||||||| | |||||||||||||||||| ||||| ||||    
T  24104719 gggtgcaccaaagctatcaccaacatcaacaaaagttgaaagtccacca 24104671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 24104659 - 24104597
Alignment:
Q  67 aaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagt 129  Q
    |||||||| ||||| |||||||  ||| | ||| |||||||||||||||| ||||||||||||    
T  24104659 aaaagttggaagtccaccagttatcaagctctgccaataagctagtaaaagaatcttataagt 24104597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 51379529 - 51379571
Alignment:
Q  38 ggtgcaccaaagctataaacaacatcaacaaaagttgtaagtc 80  Q
    |||||||||||||||| | |||||||||||||||||| |||||    
T  51379529 ggtgcaccaaagctattaccaacatcaacaaaagttggaagtc 51379571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 3857163 - 3857014
Alignment:
Q  38 ggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 137  Q
    |||||||||||||||| |  ||||||||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  3857163 ggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgaga 3857064  T
Q  138 aagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatga 187  Q
    || ||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  3857063 aataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatga 3857014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 51261867 - 51262017
Alignment:
Q  38 ggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 137  Q
    |||||| ||||||||| | |||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||| | |||||  ||||| |    
T  51261867 ggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccctgtcaataagctagtaaaataatataataagctcgtgaaa 51261966  T
Q  138 aagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  51261967 aagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgat 51262017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 15667880 - 15668011
Alignment:
Q  57 caacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaag 156  Q
    |||||||||||||||||| ||||| || ||||  ||| |||| ||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||    
T  15667880 caacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaattgttaccaacaag 15667979  T
Q  157 atcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||| ||||||||||||||| ||| ||||||    
T  15667980 atcaaggatgtgtggttcaataacttgatgat 15668011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 37382044 - 37382006
Alignment:
Q  150 caacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgat 37382006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 43137127 - 43137165
Alignment:
Q  150 caacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgat 43137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 12539455 - 12539612
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||| |||||||  ||| || || |||||||||||||||| ||||||||||| |    
T  12539455 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagccttgccaataagctagtaaaagaatcttataagcc 12539554  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  12539555 cgtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgat 12539612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 34317761 - 34317604
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||| ||||||||||| | |||||||||||||||||| ||||| |||||||  ||| |  ||||||||||||||||||| |||||||||| ||    
T  34317761 aatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagctttgtcaataagctagtaaaagaatcttataaatc 34317662  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34317661 catgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgat 34317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 8785664 - 8785813
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||| || ||||  ||||||| || ||||||||||||||||||||||||||| |    
T  8785664 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactagttatcaaaccccgttaataagctagtaaaataatcttataag-c 8785762  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 181  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8785763 aatgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 8785813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 3055362 - 3055520
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaa-gttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagt 129  Q
    |||| |||||||||||||||||| | |||||||||||||  | |  ||||  |||||||  ||| || |||||||||||||||||||||||||||||||     
T  3055362 aatagcgggtgcaccaaagctattatcaacatcaacaaattggtagaagtaaaccagttatcaagccatgtcaataagctagtaaaataatcttataagc 3055461  T
Q  130 ccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  3055462 ccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgat 3055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 27169089 - 27168943
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||| ||||||||||| | ||||||||||||||| || ||||| |||||||  |||  | ||||||||||||||||||||||||||||||| |    
T  27169089 aatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaagtcttgtcaataagctagtaaaataatcttataagcc 27168990  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaat 177  Q
    | ||||||| ||||||||| |||||||||||||||||||||||||||    
T  27168989 catgagaaataattgttacaaacaagatcaacgatgtgtggttcaat 27168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 11852602 - 11852753
Alignment:
Q  37 gggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 136  Q
    |||||||||||| |||| |  |||||||||||||||   || || | |||||  |||  |||||||||||||||||||||||||||||||||||||||||    
T  11852602 gggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaataagctagtaaaataatcttataagtccgtgag 11852701  T
Q  137 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||| ||||||||||||| || ||||||||||||||||||| ||||||    
T  11852702 aaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgat 11852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 23244800 - 23244707
Alignment:
Q  95 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  23244800 ccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgat 23244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 43727877 - 43728034
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||  |||||||  |||  | ||||||||||||||||||||||||||||||| |    
T  43727877 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaactcatgtcaataagctagtaaaataatcttataagcc 43727976  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  43727977 tatgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgat 43728034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 9230282 - 9230439
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||||||||||||| | |||||||||||||||||| || |  | |||||  ||| || ||||||||||||||||||||||||||||||| |    
T  9230282 aatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcagttatcaagccatgtcaataagctagtaaaataatcttataagcc 9230381  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||| ||||| |||||||||||||| | |||||||||||||||||||||||| ||||||    
T  9230382 cgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgat 9230439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 23804726 - 23804642
Alignment:
Q  97 ctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 181  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23804726 ctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatcaacgatgtgtggttcaatgact 23804642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 24276517 - 24276397
Alignment:
Q  36 cgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtt-tccaaaccctgtcaataagctagtaaaataatcttataagtccgtg 134  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| || | || || |||||||||||||||| |||||||||||   |||     
T  24276517 cgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaaattaatcttataacctcgtt 24276418  T
Q  135 agaaagaattgttaccaacaa 155  Q
    |||||||||||||||||||||    
T  24276417 agaaagaattgttaccaacaa 24276397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 23180109 - 23180022
Alignment:
Q  101 caataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  23180109 caataagctagtaaaataatcttataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgat 23180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 5287949 - 5288070
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||| ||||||||||| | || ||||||||||||||| ||||| ||| |||  |||| ||||||||||||||||||||||||||||| |||      
T  5287949 aatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatcttacaagct 5288048  T
Q  131 cgtgagaaagaattgttaccaa 152  Q
    |||||||||||| |||||||||    
T  5288049 cgtgagaaagaagtgttaccaa 5288070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 25024464 - 25024599
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| ||| |||||||||||||| | || ||||||||||||||| ||||| |||| ||  ||| || ||| ||||||||||||||||||||||||||| |    
T  25024464 aatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataagctagtaaaataatcttataagcc 25024563  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatg 166  Q
     | ||||| |||||||||| || || ||||||||||    
T  25024564 ggcgagaaggaattgttactaataaaatcaacgatg 25024599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 8638598 - 8638652
Alignment:
Q  134 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||    
T  8638598 gagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgat 8638652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 45197644 - 45197682
Alignment:
Q  150 caacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgat 45197682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 48606898 - 48606749
Alignment:
Q  39 gtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaa 138  Q
    ||||||||||||||| | ||| |||||||||||||| ||||| || ||||  |||||||||||||||  ||||||||||||||||||| || |||| |||    
T  48606898 gtgcaccaaagctattaccaaaatcaacaaaagttggaagtccactagttatcaaaccctgtcaatattctagtaaaataatcttatatgttcgtgggaa 48606799  T
Q  139 agaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  48606798 agaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgat 48606749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 30559299 - 30559142
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||| ||| |||  ||| |  ||||||||||||||||||||| |||||||||      
T  30559299 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaagctttgtcaataagctagtaaaatattcttataagct 30559200  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    || ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  30559199 cgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgat 30559142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 9637003 - 9637159
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| ||||||||||||||| || |  ||||||||||||||||| ||||| ||| |||   || ||||| ||||||||||||||| |||||||||||||     
T  9637003 aatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggttataaagccctgccaataagctagtaaa-taatcttataagtt 9637101  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  9637102 cgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgat 9637159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 14498779 - 14498935
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||| ||||||||||| | |||||||||||||||||| ||||  ||||||   ||| || |||||||||||||||||||||||||||||||      
T  14498779 aatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagtcatcaagccatgtcaataagctagtaaaataatcttataagct 14498878  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||| |||||||||||| |||||||||| ||||| ||||||||| ||||||    
T  14498879 cgtgagaaagatttgttaccaacatgatcaacgatttgtgg-tcaatgacttgatgat 14498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 52754032 - 52753954
Alignment:
Q  110 agtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  52754032 agtaaaataatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgat 52753954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 25017371 - 25017424
Alignment:
Q  135 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 25017424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 32380043 - 32379996
Alignment:
Q  134 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 32379996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 40864909 - 40864856
Alignment:
Q  135 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40864909 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 40864856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 30054772 - 30054839
Alignment:
Q  57 caacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatctta 124  Q
    |||||||||||||||||| ||||| ||| |||  ||| ||||  ||||||||||||||||||||||||    
T  30054772 caacatcaacaaaagttggaagtccaccggttgtcaagccctaccaataagctagtaaaataatctta 30054839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 52754078 - 52754030
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagt 79  Q
    |||| |||||||||||||||||| | |||||| ||||||||||| ||||    
T  52754078 aatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt 52754030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 17627 - 17778
Alignment:
Q  37 gggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 136  Q
    |||||||||||| |||| | |||||||||||||||||| ||||| |||||||  ||| | ||||||||||||||||||||||||||||||||  | | ||    
T  17627 gggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctgtcaataagctagtaaaataatcttataagctcattag 17726  T
Q  137 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  17727 aaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgat 17778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 12180819 - 12180662
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| ||||||| |||||| ||| |  ||||||||||||||||| ||||| | |||||  ||| ||||||||||||||| |||||||||||||||||| |    
T  12180819 aatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaagtccatcagttatcaagccctgtcaataagctggtaaaataatcttataagcc 12180720  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgactggatgat 188  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  12180719 cgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgat 12180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 11970841 - 11970991
Alignment:
Q  31 aatatcgggtgcaccaaagctataaacaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 130  Q
    |||| |||||||| ||||||||| | |||||||| |||||||   ||||| || ||||  |||||||  || |||| ||||||||||||| ||||||||     
T  11970841 aatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaaaccccatctataatctagtaaaataattttataagta 11970940  T
Q  131 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact 181  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11970941 tgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgact 11970991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 8035480 - 8035438
Alignment:
Q  110 agtaaaataatcttataagtccgtgagaaagaattgttaccaa 152  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  8035480 agtaaaataatcttatatgctcgtgagaaagaattgttaccaa 8035438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 8035535 - 8035493
Alignment:
Q  38 ggtgcaccaaagctataaacaacatcaacaaaagttgtaagtc 80  Q
    |||||||||||||||| | |||||||||||||||||| |||||    
T  8035535 ggtgcaccaaagctattaccaacatcaacaaaagttggaagtc 8035493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 435617 - 435492
Alignment:
Q  63 caacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaac 162  Q
    |||||||||||  ||||| |||||||  ||| || |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||     
T  435617 caacaaaagttcgaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaat 435518  T
Q  163 gatgtgtggttcaatgactggatgat 188  Q
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T  435517 aatgtgtggctcaatgacttgatgat 435492  T

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