View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_17 (Length: 448)
Name: NF8206A_low_17
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 23332772 - 23333219
Alignment:
| Q |
1 |
gatctaccttatagaaacccttcagctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttgg |
100 |
Q |
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| T |
23332772 |
gatctaccttatagaaacccttcagctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttgg |
23332871 |
T |
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| Q |
101 |
atcacgcaacatgacataatcatcaacatgcacgccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgac |
200 |
Q |
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| T |
23332872 |
atcacgcaacatgacataatcatcaacatgcaaaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgac |
23332971 |
T |
|
| Q |
201 |
acggttaggtccaatcaacataccaaaacagtgcaatgcccactaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaactt |
300 |
Q |
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| T |
23332972 |
acggttagttccaatcaacataccaaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaactt |
23333071 |
T |
|
| Q |
301 |
gacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgtagcattacattccaaaagtagccaaat |
400 |
Q |
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| T |
23333072 |
gacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcatagcattactttccaaaagtagccaaat |
23333171 |
T |
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| Q |
401 |
taaaaccatcgcctaatattcaaaacaacttgtggccagcaaaataga |
448 |
Q |
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| T |
23333172 |
taaaaccatcgcctaatattcaaaacaacatgtggccagcaaaataga |
23333219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
51 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacgccatattcctt |
145 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| ||||||||||| |
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| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
51 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
118 |
Q |
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||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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