View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_19 (Length: 439)
Name: NF8206A_low_19
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 33102513 - 33102087
Alignment:
| Q |
7 |
ctgagatgaacatgaagcctaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaagg |
106 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102513 |
ctgacatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaagg |
33102414 |
T |
|
| Q |
107 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcacaacgatcctcaaaacgaaacaataaccaagtgtgccaaatgataca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||||||||||| |
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| T |
33102413 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgataca |
33102314 |
T |
|
| Q |
207 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102313 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
33102214 |
T |
|
| Q |
307 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102213 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
33102114 |
T |
|
| Q |
407 |
ctgcgatgaacctatagttcatggcat |
433 |
Q |
| |
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| T |
33102113 |
ctgcgatgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 52716731 - 52716666
Alignment:
| Q |
75 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
140 |
Q |
| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttc |
52716666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
79 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
140 |
Q |
| |
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|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 428
Target Start/End: Original strand, 10838590 - 10838990
Alignment:
| Q |
28 |
ccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagttt |
127 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || ||||| || |||| |
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| T |
10838590 |
ccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggttt |
10838689 |
T |
|
| Q |
128 |
caggaaactgttccataattagaagcttagcacaacgatcctcaaaacgaaacaataaccaagtgtgccaaatgatacactgaagaaccacaacttgaac |
227 |
Q |
| |
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| |||||||| ||||| |||| ||||||||||| ||| | ||||||| |||| | || ||||| |||||| |||||||||||||||||||||||||| |
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| T |
10838690 |
ctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaac |
10838789 |
T |
|
| Q |
228 |
cataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatc |
327 |
Q |
| |
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||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || |||||||| |||||| |
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| T |
10838790 |
cattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatcatc |
10838889 |
T |
|
| Q |
328 |
cactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttca |
427 |
Q |
| |
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|| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || |||||||| |||||| |
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| T |
10838890 |
cattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatgaacctgaagttca |
10838989 |
T |
|
| Q |
428 |
t |
428 |
Q |
| |
|
| |
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|
| T |
10838990 |
t |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 257
Target Start/End: Complemental strand, 34971234 - 34971055
Alignment:
| Q |
78 |
agaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcacaacgatcctcaaaacga |
177 |
Q |
| |
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||||| ||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | |||||| | || |||||| | |
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| T |
34971234 |
agaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaa |
34971135 |
T |
|
| Q |
178 |
aacaataaccaagtgtgccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
257 |
Q |
| |
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||||| | | | || | |||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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| T |
34971134 |
aacaacatcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 25038950 - 25038852
Alignment:
| Q |
195 |
ccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgtt |
293 |
Q |
| |
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|||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||||||||||| |
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| T |
25038950 |
ccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataaccaaagtgtt |
25038852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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