View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_20 (Length: 433)
Name: NF8206A_low_20
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Original strand, 33127411 - 33127827
Alignment:
| Q |
20 |
catcaaagttggtacacgaagcaactaaaacgcattagcacaatccattgaactcgtaatacgagtgcaaaactaaataacaaaaaaggtgtgcgacctc |
119 |
Q |
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| T |
33127411 |
catcaaagttggtacacgaagcaactaaaacacattagcacaatccatcgaactcgtaatacgagtgcaaaaccaaataacaaaaaaggtgtgtgacctc |
33127510 |
T |
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| Q |
120 |
acgatgaactcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagaagtagcgacttgcaataaatagatcaacaacaacaac |
219 |
Q |
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| T |
33127511 |
acgatgaactcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagtagtagcgaattgcaataaatagatcaacaacaacaac |
33127610 |
T |
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| Q |
220 |
ctagaagtgaatcttccagatcgtgaagtacaaaaaaccagtcatagaattgcccttttat---atagggttaagggacaacatgttcgcttggatccaa |
316 |
Q |
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| T |
33127611 |
ctagaagtgaatcttccagatcgtgaagtacaaaaaatcagtcataaaattgcccttttatataatagggttaagggacaacatgttcgcttggatccaa |
33127710 |
T |
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| Q |
317 |
acgatgaagagccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127711 |
acgatgaagagccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcat |
33127810 |
T |
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| Q |
417 |
gcgtacaacggtgttga |
433 |
Q |
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| T |
33127811 |
gcgtacaacggtgttga |
33127827 |
T |
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