View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_205 (Length: 210)
Name: NF8206A_low_205
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_205 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 6137470 - 6137334
Alignment:
| Q |
22 |
gataattccaaagaaatgatgaaacttaagattgttcatgagagttctacgaagtctggagaggaaactgaaacttcatcctttaaacaagaacaatttg |
121 |
Q |
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| T |
6137470 |
gataattccaaagaaatgatgaaacttaagattgttcatgagagttctacgaagtctggagaggaaactgaaacttcatcctttaaacaagaacaatttg |
6137371 |
T |
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| Q |
122 |
agaaggtggaggattatactggaggaggttttgatgt |
158 |
Q |
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| T |
6137370 |
agaaggtggaggattatactggaggaggttctgatgt |
6137334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 6175580 - 6175444
Alignment:
| Q |
22 |
gataattccaaagaaatgatgaaacttaagattgttcatgagagttctacgaagtctggagaggaaactgaaacttcatcctttaaacaagaacaatttg |
121 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||||| |||||||| | |
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| T |
6175580 |
gataattccaaagaaattatgaaatttaagattgttcatgagagttctgcgaagtctggagatgaaactgaaacttcttccaacaaacatgaacaattcg |
6175481 |
T |
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| Q |
122 |
agaaggtggaggattatactggaggaggttttgatgt |
158 |
Q |
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|||||| | |||||| ||||||||||| || |||||| |
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| T |
6175480 |
agaaggagaaggattctactggaggagattctgatgt |
6175444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 6185444 - 6185339
Alignment:
| Q |
22 |
gataattccaaagaaatgatgaaacttaagattgttcatgagagttctacgaagtctggagaggaaactgaaacttcatcctttaaacaagaacaatttg |
121 |
Q |
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|||||||| ||| ||||| ||||| ||||||| || |||||| || ||| | ||||||||||||||| |||||||| || |||||||||||||||| |
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| T |
6185444 |
gataattcaaaacaaatggtgaaatctaagattctttatgagaattgtacaatgtctggagaggaaaccgaaacttcttcacacaaacaagaacaatttg |
6185345 |
T |
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| Q |
122 |
agaagg |
127 |
Q |
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|||||| |
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| T |
6185344 |
agaagg |
6185339 |
T |
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