View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_206 (Length: 210)
Name: NF8206A_low_206
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_206 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16438209 - 16438403
Alignment:
| Q |
1 |
catcaacacaaaaatggcagcgacaggggagattgatccaaatcgaaggtgacaaagagcagataaagaaagagaaacaaaacaaacccccaaaaatgga |
100 |
Q |
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| T |
16438209 |
catcaacacaaaaatggcagcgactttggagatggatccaaatcgaaggtaacaaag-gtagacaaagaaagaaaaacaaaacaaaccctcaaaaatgga |
16438307 |
T |
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| Q |
101 |
atcaacccgcaaactcgtcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa |
196 |
Q |
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| T |
16438308 |
accaacccacaaactcctcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaacttctaacccaacaacaccaa |
16438403 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 39041731 - 39041807
Alignment:
| Q |
120 |
atcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa |
196 |
Q |
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|||||||| |||||||||||||||||||| | ||| ||||| ||||| |||| |||||||| |||||| |||||| |
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| T |
39041731 |
atcatcaccacaaccaaaattcaccaccacacacaagatcacaattaacattccaactcccagtccaacatcaccaa |
39041807 |
T |
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