View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_213 (Length: 203)
Name: NF8206A_low_213
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_213 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 13879712 - 13879873
Alignment:
| Q |
19 |
gaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggac |
118 |
Q |
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| T |
13879712 |
gaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggac |
13879811 |
T |
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| Q |
119 |
atgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacag |
180 |
Q |
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| T |
13879812 |
atgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgacag |
13879873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 13875489 - 13875640
Alignment:
| Q |
19 |
gaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggac |
118 |
Q |
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| T |
13875489 |
gaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaaggcacggcggcc |
13875588 |
T |
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| Q |
119 |
atgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
170 |
Q |
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| T |
13875589 |
atgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
134 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
170 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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