View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_29 (Length: 387)
Name: NF8206A_low_29
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 4 - 387
Target Start/End: Complemental strand, 2345641 - 2345258
Alignment:
| Q |
4 |
aagaatatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaagatcagaatgattcacactgttcttttcttttttgtt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
2345641 |
aagaatatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaaaatcagaatgattcacactattcttttcttttttgtt |
2345542 |
T |
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| Q |
104 |
cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345541 |
cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactcccaaacaccccttcaggctatccatgcaaatcagaaacaaatg |
2345442 |
T |
|
| Q |
204 |
taacagtgaatgattttgtgttctctggcttggtacctggaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccagg |
303 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2345441 |
taacagtgaatgattttgtgttctctggcttagtacctggaagcacaataaacccttttaattttgcaataacatctgcatttgtcactagtttaccagg |
2345342 |
T |
|
| Q |
304 |
tcttaatggacttggtatctctgcagcaagagcggattttggtataaatggaagtgttccagtgcacactcatgatgcaactga |
387 |
Q |
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| T |
2345341 |
tcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcatgatgcaactga |
2345258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 132 - 369
Target Start/End: Original strand, 7319492 - 7319729
Alignment:
| Q |
132 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
231 |
Q |
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||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| | |
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| T |
7319492 |
atgatttctgtgttgcagacttacagcttccaaataccccttcaggctatccatgcaagtcagaaacaaatgtaacagtggatgattttttattctccga |
7319591 |
T |
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| Q |
232 |
cttggtacctggaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagca |
331 |
Q |
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||| |||||| ||| ||||||| ||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7319592 |
ctttgtacctagaaacacaatagacccttttaatgttagattaaccactgcattcgtcactagtttaccaggtcttaatggacttggtatctccgcagca |
7319691 |
T |
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| Q |
332 |
agagcggattttggtataaatggaagtgttccagtgca |
369 |
Q |
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| T |
7319692 |
aggggggactttggcttaaatggaactgttccaatgca |
7319729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 132 - 370
Target Start/End: Original strand, 7321812 - 7322053
Alignment:
| Q |
132 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
231 |
Q |
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||||||| ||||| ||||| |||| || |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
7321812 |
atgatttctgtgtggcagatttacagcttccaaacactccttcaggctatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctgg |
7321911 |
T |
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| Q |
232 |
cttggtacctggaagcacaa---taaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgca |
328 |
Q |
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||| ||||| |||||||||| || ||||||||||| || || ||||| |||| ||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
7321912 |
ctttgtacccggaagcacaatattagacccttttaatgttacattaaccactgcttttgttactagtttaccaggtcttaatcgacttggtttctctgca |
7322011 |
T |
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| Q |
329 |
gcaagagcggattttggtataaatggaagtgttccagtgcac |
370 |
Q |
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| T |
7322012 |
gcaaagggagactttggtataaatggaactgttccaatgcac |
7322053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 376
Target Start/End: Complemental strand, 7318628 - 7318375
Alignment:
| Q |
129 |
ctgatgatttatgtgtagcagacttactact---accaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgtt |
225 |
Q |
| |
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|||||||||| ||||||||| ||||| | || | || ||||||||||||||||||||||||||||||||| | |||||||| | ||||||| ||| |
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| T |
7318628 |
ctgatgatttctgtgtagcaaacttatttcttacatcagacaccccttcaggctatccatgcaaatcagaaaaatttgtaacagcggatgatttcatgta |
7318529 |
T |
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| Q |
226 |
ctctggcttggta---cctggaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatc |
322 |
Q |
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|||| |||| | | |||||| |||| |||||||||||| ||| | ||||||| | | ||||| || |||| ||||||| ||||||| | | |
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| T |
7318528 |
ctctagcttagcagctgctggaaacacagcaaacccttttaaagttggattaacctcggtaaatgtcagtaatttagcaggtctcaatggacataagtta |
7318429 |
T |
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| Q |
323 |
tctgcagcaagagcggattttggtataaatggaagtgttccagtgcacactcat |
376 |
Q |
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|||||||||||| ||| ||||||||||||||||||| ||| ||||||||||| |
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| T |
7318428 |
tctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcat |
7318375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 7324576 - 7324681
Alignment:
| Q |
129 |
ctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctc |
228 |
Q |
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|||||||||| ||||||||||||||| | ||| |||||||||| |||||||||||||| || |||| |||||||||| |||||||||| ||||| |
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| T |
7324576 |
ctgatgatttctgtgtagcagacttatcgtttccagacaccccttcgggctatccatgcaagtcggaaaacaatgtaacagctgatgattttgtattctc |
7324675 |
T |
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| Q |
229 |
tggctt |
234 |
Q |
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|||||| |
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| T |
7324676 |
tggctt |
7324681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 7324750 - 7324829
Alignment:
| Q |
297 |
taccaggtcttaatggacttggtatctctgcagcaagagcggattttggtataaatggaagtgttccagtgcacactcat |
376 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| ||| |||| | ||||||||||| ||| ||||||||||| |
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| T |
7324750 |
taccaggtctcaatggacttggtatctctgtagcaagaatagatcttggcttcaatggaagtgtaccaatgcacactcat |
7324829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 32984274 - 32984314
Alignment:
| Q |
205 |
aacagtgaatgattttgtgttctctggcttggtacctggaa |
245 |
Q |
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| T |
32984274 |
aacagtggatgattttgtgttctctggctttgtacctggaa |
32984314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 32984153 - 32984186
Alignment:
| Q |
90 |
ttttcttttttgttcttctctcatcatatacctc |
123 |
Q |
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| T |
32984153 |
ttttcttttttgttctcctctcatcatatacctc |
32984186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 32984243 - 32984271
Alignment:
| Q |
165 |
acaccccttcaggctatccatgcaaatca |
193 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32984243 |
acaccccttcaggctatccatgcaaatca |
32984271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 6521346 - 6521374
Alignment:
| Q |
165 |
acaccccttcaggctatccatgcaaatca |
193 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6521346 |
acaccccttcaggctatccatgcaaatca |
6521374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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