View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_30 (Length: 385)
Name: NF8206A_low_30
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 9593973 - 9593830
Alignment:
| Q |
23 |
caagaactcctaaaccaagattcacaaacctcaaaaccaactcagttattctaaccctcctatccaacactttcatgtttgtactatgataaactggaac |
122 |
Q |
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| T |
9593973 |
caagaactcctaagccaagattcacaaacctcaaaaccaactcagttattctaaccctcctatccaacactttcatgtttgtactatgataaactggaac |
9593874 |
T |
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| Q |
123 |
agttccaggactaacacctacacccaagtaactcatttttcctt |
166 |
Q |
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| T |
9593873 |
agttccaggactaacacctacacccaagtaactcatttttcctt |
9593830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 9593764 - 9593629
Alignment:
| Q |
232 |
ttttgtgctttatagttccaaactagtgatgataaagcatagaaacaagtatacaatgctgcaaagtgtgacaagtggtcaagaatggaggcttctagga |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9593764 |
ttttgtgctttatagttccaaactagtgatgataaagcatagatacaagtatacaatgctgcaaagtgtgacaagtggtcaagaatggaggtttctagga |
9593665 |
T |
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| Q |
332 |
cagagaaagaggttaagtaagaaaaaaggcactttc |
367 |
Q |
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| T |
9593664 |
cagagaaagaggttaagtaagaaaaaaggcactttc |
9593629 |
T |
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