View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_36 (Length: 363)

Name: NF8206A_low_36
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_36
NF8206A_low_36
[»] chr4 (21 HSPs)
chr4 (149-357)||(40391670-40391878)
chr4 (149-357)||(40380329-40380537)
chr4 (149-305)||(41054623-41054782)
chr4 (33-145)||(13307881-13307993)
chr4 (28-136)||(44362665-44362773)
chr4 (15-148)||(37496690-37496834)
chr4 (9-73)||(34589721-34589785)
chr4 (98-145)||(39619045-39619092)
chr4 (10-76)||(10634971-10635037)
chr4 (38-81)||(10164861-10164904)
chr4 (98-148)||(5998885-5998935)
chr4 (7-84)||(11797632-11797712)
chr4 (43-84)||(12895120-12895161)
chr4 (25-70)||(28663488-28663533)
chr4 (36-84)||(13117436-13117484)
chr4 (29-84)||(21945503-21945558)
chr4 (36-81)||(13484030-13484076)
chr4 (43-117)||(29205458-29205532)
chr4 (15-121)||(56049863-56049968)
chr4 (29-117)||(23292957-23293045)
chr4 (35-71)||(49887762-49887798)
[»] chr6 (19 HSPs)
chr6 (7-142)||(1334639-1334774)
chr6 (9-144)||(26402624-26402761)
chr6 (17-84)||(19369805-19369872)
chr6 (94-148)||(785384-785438)
chr6 (22-80)||(10031563-10031621)
chr6 (35-84)||(6751886-6751935)
chr6 (35-151)||(32225327-32225443)
chr6 (29-84)||(785459-785515)
chr6 (9-84)||(22745938-22746012)
chr6 (4-82)||(5579629-5579707)
chr6 (98-148)||(34197185-34197235)
chr6 (43-121)||(34595148-34595226)
chr6 (88-148)||(26178542-26178602)
chr6 (43-86)||(10157998-10158041)
chr6 (43-117)||(28715309-28715383)
chr6 (7-84)||(426518-426595)
chr6 (43-120)||(16833322-16833399)
chr6 (29-81)||(20809643-20809695)
chr6 (35-71)||(29959181-29959217)
[»] chr2 (15 HSPs)
chr2 (12-148)||(43585945-43586081)
chr2 (16-82)||(13501084-13501150)
chr2 (1-84)||(33884023-33884106)
chr2 (15-84)||(11223867-11223936)
chr2 (38-81)||(14450802-14450845)
chr2 (2-121)||(15972846-15972965)
chr2 (2-65)||(39399885-39399948)
chr2 (7-81)||(44984657-44984729)
chr2 (99-148)||(14450707-14450756)
chr2 (39-80)||(24067263-24067304)
chr2 (7-84)||(24067728-24067805)
chr2 (35-80)||(42665614-42665659)
chr2 (36-84)||(14373431-14373479)
chr2 (21-73)||(17808512-17808564)
chr2 (29-81)||(18512149-18512201)
[»] chr7 (17 HSPs)
chr7 (7-136)||(1885551-1885675)
chr7 (10-148)||(5937361-5937499)
chr7 (28-149)||(25956446-25956564)
chr7 (22-81)||(44317293-44317352)
chr7 (21-81)||(2144546-2144604)
chr7 (7-84)||(22801745-22801822)
chr7 (31-145)||(48963995-48964119)
chr7 (20-80)||(35238192-35238252)
chr7 (14-84)||(36013802-36013873)
chr7 (29-81)||(9050140-9050192)
chr7 (32-75)||(2143866-2143909)
chr7 (29-84)||(7438706-7438761)
chr7 (7-80)||(36196760-36196831)
chr7 (35-81)||(37820086-37820132)
chr7 (16-81)||(10702551-10702615)
chr7 (27-84)||(38134410-38134467)
chr7 (4-84)||(11061080-11061160)
[»] chr5 (17 HSPs)
chr5 (7-82)||(21319951-21320026)
chr5 (8-150)||(7621168-7621315)
chr5 (2-84)||(19167580-19167663)
chr5 (2-84)||(30080505-30080587)
chr5 (4-70)||(41558701-41558767)
chr5 (5-81)||(38784782-38784858)
chr5 (36-84)||(10010561-10010609)
chr5 (7-84)||(20763353-20763432)
chr5 (41-84)||(15294943-15294986)
chr5 (16-82)||(15302512-15302576)
chr5 (30-85)||(24906304-24906359)
chr5 (107-147)||(9031879-9031919)
chr5 (15-117)||(42893346-42893448)
chr5 (43-84)||(8420041-8420082)
chr5 (7-84)||(13287403-13287480)
chr5 (29-82)||(20260541-20260593)
chr5 (29-82)||(31084323-31084376)
[»] chr8 (16 HSPs)
chr8 (7-82)||(26915246-26915321)
chr8 (7-81)||(42874500-42874574)
chr8 (7-144)||(34073922-34074058)
chr8 (39-82)||(31119097-31119140)
chr8 (30-80)||(27733848-27733898)
chr8 (9-81)||(10497823-10497895)
chr8 (43-117)||(36450725-36450799)
chr8 (9-82)||(2652319-2652391)
chr8 (7-84)||(18170486-18170563)
chr8 (7-84)||(18634054-18634131)
chr8 (7-84)||(22651954-22652031)
chr8 (35-84)||(24295141-24295190)
chr8 (43-84)||(31548297-31548338)
chr8 (16-84)||(5307048-5307115)
chr8 (7-103)||(20873047-20873143)
chr8 (28-84)||(25566840-25566896)
[»] scaffold0122 (1 HSPs)
scaffold0122 (18-148)||(10247-10367)
[»] scaffold0314 (1 HSPs)
scaffold0314 (35-144)||(8954-9061)
[»] chr3 (9 HSPs)
chr3 (35-117)||(14338454-14338536)
chr3 (17-73)||(11093558-11093614)
chr3 (50-147)||(34834869-34834965)
chr3 (29-84)||(49179719-49179774)
chr3 (43-117)||(20503479-20503553)
chr3 (43-109)||(10954966-10955032)
chr3 (30-82)||(12704663-12704715)
chr3 (28-84)||(26508109-26508165)
chr3 (15-71)||(41319327-41319383)
[»] chr1 (12 HSPs)
chr1 (29-78)||(24462280-24462329)
chr1 (14-85)||(40686761-40686832)
chr1 (99-145)||(18950996-18951041)
chr1 (16-84)||(38078665-38078733)
chr1 (9-81)||(46748915-46748987)
chr1 (39-80)||(18946042-18946083)
chr1 (7-84)||(21378556-21378633)
chr1 (30-82)||(24176820-24176873)
chr1 (15-84)||(24577190-24577259)
chr1 (36-81)||(28170389-28170433)
chr1 (4-84)||(1486713-1486793)
chr1 (9-76)||(16925593-16925661)
[»] scaffold0652 (1 HSPs)
scaffold0652 (43-121)||(429-507)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-80)||(18116-18181)
[»] scaffold0050 (1 HSPs)
scaffold0050 (29-116)||(70278-70365)
[»] scaffold0504 (2 HSPs)
scaffold0504 (99-148)||(8642-8691)
scaffold0504 (35-80)||(8705-8750)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 149 - 357
Target Start/End: Original strand, 40391670 - 40391878
Alignment:
Q  149 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcttatccgttcatgaacaa 248  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||    
T  40391670 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatggacattcatgacattctaggattagcatctctgttcatgaacaa 40391769  T
Q  249 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagatc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40391770 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaac 40391869  T
Q  349 gaacattgt 357  Q
    |||||||||    
T  40391870 gaacattgt 40391878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 149 - 357
Target Start/End: Original strand, 40380329 - 40380537
Alignment:
Q  149 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcttatccgttcatgaacaa 248  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||    
T  40380329 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatgaacattcatgacattctaggattagcatctctgttcatgaacaa 40380428  T
Q  249 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagatc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40380429 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaac 40380528  T
Q  349 gaacattgt 357  Q
    |||||||||    
T  40380529 gaacattgt 40380537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 41054782 - 41054623
Alignment:
Q  149 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcttatcc-gt--tcatgaa 245  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||  ||||||| ||||||||||  ||| ||  ||| |||    
T  41054782 cttactatgctaaattttatctttcaaaatttcagcttgtacatccagagaacaaggacattcgcgacattccaggattagctcctcctgttgtcacgaa 41054683  T
Q  246 caacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactt 305  Q
    ||||| ||||||||||||||||||||| |||  |||| || | |||||||||||||||||    
T  41054682 caacagaagactgctttggaatcacagttgattattttaagtgaagattgtgatgaactt 41054623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 13307881 - 13307993
Alignment:
Q  33 cagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaag 132  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| |||   ||||||||  |||||| ||||||| ||||  ||||||| ||||||    
T  13307881 cagataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaag 13307980  T
Q  133 tgtccgtgcaaca 145  Q
    |||  ||||||||    
T  13307981 tgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 44362665 - 44362773
Alignment:
Q  28 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 127  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||||||| |||    |||||||  ||| ||||||| | ||||||||||| || |    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatc 44362764  T
Q  128 agaagtgtc 136  Q
    |||||||||    
T  44362765 agaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 37496690 - 37496834
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----------tactggacacgatgcgtgtc 103  Q
    ||||| ||||| ||||||| |||||  |||||| ||||||||||||||||| |||||||||||||||||           | | ||||||||  | ||||    
T  37496690 gacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtc 37496789  T
Q  104 ggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||||| |||||| ||||||| || |||||||||||||||||||    
T  37496790 ggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 34589785 - 34589721
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 73  Q
    ||||| ||||||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||||    
T  34589785 gacacggacacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 39619092 - 39619045
Alignment:
Q  98 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 145  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  39619092 cgtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 10634971 - 10635037
Alignment:
Q  10 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaa 76  Q
    |||||||||||| ||| | || || ||||||||||||||||||||||||||||||| || |||||||    
T  10634971 acactgacacgggcacgtcgatactgataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 10164904 - 10164861
Alignment:
Q  38 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 5998885 - 5998935
Alignment:
Q  98 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||||||||||| |||||||||||||| || ||||||| |||||||||||    
T  5998885 cgtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 11797712 - 11797632
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaa---tgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||| |||||||| |||||  ||||  |||||||||||||||||   |||||||||| || ||||||||||||||||||    
T  11797712 acgacattgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggt 11797632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 12895161 - 12895120
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  12895161 tttgaaaaaatcacataattcaaagtaattacaagtgtcggt 12895120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 28663488 - 28663533
Alignment:
Q  25 cattgacacagataaaattttgaaaaaatgacataattcaaagtaa 70  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  28663488 cattgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 13117436 - 13117484
Alignment:
Q  36 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggt 13117484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 21945503 - 21945558
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||| | ||||||||||||||||||||||  ||||| ||||||||||||    
T  21945503 gacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 13484030 - 13484076
Alignment:
Q  36 ataaaattttgaaaaaatgacataattcaaa-gtaatcacaagtgtc 81  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgtc 13484076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 29205458 - 29205532
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  29205458 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 56049863 - 56049968
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 114  Q
    ||||||||||||| ||||| ||||| | |||| | |||||||||| ||||| ||||||| | ||||||||    |||| ||| ||| || ||||||||||    
T  56049863 gacacggacacatcgacaccgataataatttg-agaaatgacatagttcaatgtaatcatatgtgtcggtgtcagacatgatacgtatccgacaccagga 56049961  T
Q  115 cacacct 121  Q
    |||||||    
T  56049962 cacacct 56049968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 23293045 - 23292957
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||| ||| | ||||||||||| ||||||||||   |||| ||||||||||||   ||||||||  |||||| |||||| ||||||    
T  23293045 gacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacac 23292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 49887762 - 49887798
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaat 71  Q
    |||||||||||||| |||||||||||||||| |||||    
T  49887762 gataaaattttgaagaaatgacataattcaatgtaat 49887798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 1334639 - 1334774
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 106  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||   | ||||||||||||||| |    
T  1334639 acgacactgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaa 1334738  T
Q  107 caccaggacacaccttcaaccagaagtgtccgtgca 142  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1334739 caccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 26402761 - 26402624
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaa--tgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 106  Q
    ||||||||||| |||| || ||||  ||||||||||||||||||  ||||||||||||  ||||||||||||||||||   ||||||||| | ||| |||    
T  26402761 gacactgacacagacagatcgacaatgataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttgga 26402662  T
Q  107 caccaggacacaccttcaaccagaagtgtccgtgcaac 144  Q
    ||||  |||||  |||||| ||||||||||||||||||    
T  26402661 caccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 19369805 - 19369872
Alignment:
Q  17 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  19369805 cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 19369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 785438 - 785384
Alignment:
Q  94 gatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  785438 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 10031563 - 10031621
Alignment:
Q  22 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10031563 acacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 6751935 - 6751886
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6751935 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 6751886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 32225443 - 32225327
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtg 134  Q
    ||||||||||||| ||||| || | | |||| ||||||||| ||||||||   ||||||||  | ||||||||||| |||||||||||||| ||| ||||    
T  32225443 gataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtg 32225344  T
Q  135 tccgtgcaacagagctt 151  Q
    |  ||||| ||||||||    
T  32225343 tttgtgcagcagagctt 32225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 785515 - 785459
Alignment:
Q  29 gacacagataaaattttgaaaa-aatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  785515 gacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggt 785459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 22745938 - 22746012
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||| |||| ||||||| ||||| ||||||||||||| ||||||  ||| ||||| ||||||||||||||||||    
T  22745938 gacactcacactgacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggt 22746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 5579629 - 5579707
Alignment:
Q  4 gatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||||||  |||||||| | || | ||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||||||    
T  5579629 gatacgatgctgacacgaatacgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 34197185 - 34197235
Alignment:
Q  98 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||| ||||    
T  34197185 cgtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagag 34197235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 34595148 - 34595226
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacct 121  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||   ||||||||  |||||| |||||| ||||||||||    
T  34595148 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacct 34595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 26178542 - 26178602
Alignment:
Q  88 ggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||||||  ||||||||||| | ||||| |||||||| |||||||||||||||| |||||    
T  26178542 ggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 10157998 - 10158041
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 86  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcggtac 10158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 28715309 - 28715383
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||||||||||||||||||  ||||| ||||||||||||   ||||||||  |||||  |||||| ||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacac 28715383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 426595 - 426518
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||| || ||||| ||||||||||||    
T  426595 acgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggt 426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 16833322 - 16833399
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacc 120  Q
    ||||||||||| ||||| ||||  ||||| ||||||||||||  | |||||||  || ||| ||||||||||||||||    
T  16833322 tttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacacc 16833399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 20809643 - 20809695
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||| ||||||||||||||||| | |||||||  || |||||||||||||||    
T  20809643 gacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgtc 20809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 29959181 - 29959217
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaat 71  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29959181 gataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 43586081 - 43585945
Alignment:
Q  12 actgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacacca 111  Q
    |||||||| ||||| |  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||| |||||| |||||      
T  43586081 actgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacat 43585982  T
Q  112 ggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  43585981 ggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13501150 - 13501084
Alignment:
Q  16 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||||||||||| ||| | ||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  13501150 acacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33884023 - 33884106
Alignment:
Q  1 tcagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||| ||| ||||||||| ||||||| || || ||||||||| ||| |||||||||| |||||  ||||| ||||||||||||    
T  33884023 tcagacacggcactgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggt 33884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 11223936 - 11223867
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||| |||||  |||||||| ||| ||||||||||||| ||||||||||  ||||| ||||||||||||    
T  11223936 gacacagacacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggt 11223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 14450845 - 14450802
Alignment:
Q  38 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgtc 14450802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 15972846 - 15972965
Alignment:
Q  2 cagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtg 101  Q
    |||||||||||| ||||| |||||   ||||||  ||| | ||||||||||| ||| ||||||  ||||| ||||||||||||   ||||||||  ||||    
T  15972846 cagatacgacacggacactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtg 15972945  T
Q  102 tcggacaccaggacacacct 121  Q
    || ||| || ||||||||||    
T  15972946 tccgacgccgggacacacct 15972965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 39399885 - 39399948
Alignment:
Q  2 cagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaa 65  Q
    |||| ||||||  ||||| ||||||||||||| ||| ||||||| | |||||||||||||||||    
T  39399885 cagacacgacatggacactgacacattgacaccgatgaaatttttagaaaatgacataattcaa 39399948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 44984729 - 44984657
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||||||||  |||| | |||||  || ||||||||||||||||| ||||||||| || ||||||||||||    
T  44984729 acgacactgacac--acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgtc 44984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 14450756 - 14450707
Alignment:
Q  99 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||| |||||| ||||||  |||||| ||||||||||||||||||||||    
T  14450756 gtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagag 14450707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  39 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 24067728 - 24067805
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||| ||| | ||||||||||| |  | ||||||||||| |||||| ||||||| || | ||||||||||||||||    
T  24067728 acgacattgataaggacacattgatatcggtaaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggt 24067805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 42665614 - 42665659
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||    
T  42665614 gataaaattttgaaaagatgacatgattcaatgtaatcacatgtgt 42665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 14373479 - 14373431
Alignment:
Q  36 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||||||   ||||||||||||||| ||||||||| ||||||||    
T  14373479 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggt 14373431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 17808564 - 17808512
Alignment:
Q  21 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 73  Q
    ||||| ||||||||||||||| ||||| | ||||| ||||||||| |||||||    
T  17808564 gacacgttgacacagataaaaatttgatagaatgatataattcaatgtaatca 17808512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||| ||||||||||||| ||||| | ||||||||| ||||||||| |||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 1885551 - 1885675
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 106  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    | |  | || ||||||||    
T  1885551 acgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggt----gtcgtgttg-gtgtcgga 1885645  T
Q  107 caccaggacacaccttcaaccagaagtgtc 136  Q
    ||||||||||||| ||||| ||||||||||    
T  1885646 caccaggacacacgttcaatcagaagtgtc 1885675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 5937499 - 5937361
Alignment:
Q  10 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 109  Q
    |||||||||| ||||| |  |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||   || |||||| | ||||||||||    
T  5937499 acactgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacac 5937400  T
Q  110 caggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||| | || |||||||   ||||||||||||||| ||||    
T  5937399 cagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 25956446 - 25956564
Alignment:
Q  28 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 127  Q
    ||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||||||   ||||||||| | ||||||||| | |||||| ||||||| |    
T  25956446 tgacacaaataaaattgtgaaaa--tgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatc 25956542  T
Q  128 agaagtgtccgtgcaacagagc 149  Q
    |||||||||||||||| |||||    
T  25956543 agaagtgtccgtgcaatagagc 25956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 44317352 - 44317293
Alignment:
Q  22 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  44317352 acacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgtc 44317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 2144604 - 2144546
Alignment:
Q  21 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2144604 gacacattgacaca--taaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 22801822 - 22801745
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||| |||||||||| |  |||| ||| ||||||||| | ||||||||||||||  ||||||||||||||||||    
T  22801822 acgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggt 22801745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 48964119 - 48963995
Alignment:
Q  31 cacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac----------tggacacgatgcgtgtcggacaccaggacacacc 120  Q
    ||||||||||||| ||| |||||||||||||||||  ||||||||||||| |||            |||||||||| ||||||| ||||| ||||| |||    
T  48964119 cacagataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtaagtgtggacacgatacgtgtcgaacaccgggacatacc 48964020  T
Q  121 ttcaaccagaagtgtccgtgcaaca 145  Q
    ||||| ||||||||||| |||||||    
T  48964019 ttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 35238252 - 35238192
Alignment:
Q  20 ggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||  |||||||| ||||    
T  35238252 ggacacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 36013873 - 36013802
Alignment:
Q  14 tgacacggacacattgacacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||| ||||||||||||  ||||| | ||||| |||||||||||||||||| ||||||||| ||||||||    
T  36013873 tgacactgacacattgacaatgataataatttgagaaaaatgacataattcaatgtaatcacacgtgtcggt 36013802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 9050192 - 9050140
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||| |||||||||||||||||||||||||| |||||  |||||||| |||||    
T  9050192 gacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtc 9050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 2143909 - 2143866
Alignment:
Q  32 acagataaaattttgaaaaaatgacataattcaaagtaatcaca 75  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  2143909 acagattaaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 7438706 - 7438761
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  7438706 gacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 7438761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 36196760 - 36196831
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    ||||| ||||||||||| | ||||||||  ||||||||||| ||||  |||||||||||  |||||||||||||    
T  36196760 acgaccctgacacggacgcgttgacaca--taaaattttgagaaaacaacataattcaacataatcacaagtgt 36196831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 37820086 - 37820132
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgtc 37820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 10702615 - 10702551
Alignment:
Q  16 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||||||| || || ||||||||||||| |||||||||| |||||| ||||| | |||||||    
T  10702615 acacggacacatcgatactgataaaattttgagaaaatgacat-attcaatgtaattataagtgtc 10702551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 38134467 - 38134410
Alignment:
Q  27 ttgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||    
T  38134467 ttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11061160 - 11061080
Alignment:
Q  4 gatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||| ||||| ||||||  ||||||| ||| | ||||||||||| |||||||| |   |||| ||||||||||||    
T  11061160 gatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggt 11061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 21320026 - 21319951
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21320026 acgacactgatatggacacattgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtcg 21319951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 7621315 - 7621168
Alignment:
Q  8 cgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----tactggacacgatgcgtgt 102  Q
    ||||||||||| |||||| | ||||||||||||||||  ||||| |||||||||| || |||||||||||| ||||     ||   |||||||| | | |    
T  7621315 cgacactgacatggacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttat 7621216  T
Q  103 cggacaccaggacacaccttcaaccagaagtgtccgtgcaacagagct 150  Q
    |||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  7621215 cggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagct 7621168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 19167663 - 19167580
Alignment:
Q  2 cagatacgacactgacacggacacattgacacagataaaattttgaa-aaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||| ||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  19167663 cagacacgacactgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggt 19167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 30080587 - 30080505
Alignment:
Q  2 cagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||| |||||| ||||||||| |  | ||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  30080587 cagacacgacaatgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggt 30080505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 41558767 - 41558701
Alignment:
Q  4 gatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaa 70  Q
    |||||||||| ||||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||    
T  41558767 gatacgacacggacactgacacattgacacaaataataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 38784782 - 38784858
Alignment:
Q  5 atacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||||| ||||  |||||| | ||| ||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  38784782 atacgacactaacactaacacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 10010561 - 10010609
Alignment:
Q  36 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggt 10010609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 20763353 - 20763432
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatg--acataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||||||  |||||||||||| |||||  |||| |||||| |  ||||||||||| ||||||||||||||||||    
T  20763353 acgacactgacacaaacacattgacaccgataatttttttaaaaaaagttacataattcaacgtaatcacaagtgtcggt 20763432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 15294943 - 15294986
Alignment:
Q  41 attttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  15294943 attttgaaaaaatgacataattcaaggtaatcacaagtgccggt 15294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 15302512 - 15302576
Alignment:
Q  16 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||| ||||||| ||||  ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  15302512 acacagacacatcgacaacgataaaattttgaaaaaatgac--aattcaaggtaatcacaagtgtcg 15302576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 24906359 - 24906304
Alignment:
Q  30 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 85  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||||||||    
T  24906359 acacagataataatttgaaaaaatgacataattcagtgtaattacaagtgtcggta 24906304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  107 caccaggacacaccttcaaccagaagtgtccgtgcaacaga 147  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 42893346 - 42893448
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 114  Q
    ||||||||||||  ||||||| ||| | ||||||||||| ||||||| ||  ||||| ||||||||||||    ||||| |  |||||| ||||||||||    
T  42893346 gacacggacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccagga 42893445  T
Q  115 cac 117  Q
    |||    
T  42893446 cac 42893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 8420041 - 8420082
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  8420041 tttgaaaaaataacataattcaatgtaattacaagtgtcggt 8420082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 13287480 - 13287403
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| |||||  |||| | ||||||||||| | ||||||||||| ||||||||||  ||||  ||||||||||||    
T  13287480 acgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggt 13287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 20260593 - 20260541
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    ||||| ||||||||||| |||||| |||||||||||||||| | ||||||||||    
T  20260593 gacaccgataaaattttaaaaaaa-gacataattcaaagtatttacaagtgtcg 20260541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31084323 - 31084376
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  31084323 gacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcg 31084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 26915321 - 26915246
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    ||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||    
T  26915321 acgacactgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 42874500 - 42874574
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||| |||||||||| | ||||| | ||| ||||||| ||||||||||||||||| |||||||||||||||    
T  42874500 acgacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 34074058 - 34073922
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 106  Q
    |||||||||| ||| |||||  ||||| |||||||||||||||||||||||||||| || ||||||| |||||||| ||   ||||||   ||||||| |    
T  34074058 acgacactgatacgaacacac-gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcgatatcagacacgtcacgtgtcgca 34073960  T
Q  107 caccaggacacaccttcaaccagaagtgtccgtgcaac 144  Q
    || || ||||| ||||||| || ||||||  |||||||    
T  34073959 catcatgacacgccttcaatcaaaagtgtttgtgcaac 34073922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  39 aaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  30 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 10497895 - 10497823
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||||||||| |||||   ||||| ||||||||||||| ||||| ||||||||  | |||||||||||||||    
T  10497895 gacactgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtc 10497823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 36450799 - 36450725
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||||||| ||| ||||||  ||||| |||||||| |||   |||||||| ||||||| |||||||||||||    
T  36450799 tttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacac 36450725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 2652319 - 2652391
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||||| ||||||| |||| ||| | |||||| |||| | |||||||||||||| || ||||||||||||||||    
T  2652319 gacactaacacggatacatcgaccctgataaattttttagaaaatgacataatt-aatgtaatcacaagtgtcg 2652391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 18170563 - 18170486
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18170563 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18170486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 18634131 - 18634054
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18634131 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18634054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 22651954 - 22652031
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||||||  |||| ||||||||||||    
T  22651954 acgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggt 22652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 24295190 - 24295141
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||||| ||| ||||||||| |||| || ||||||||||||||||||    
T  24295190 gataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggt 24295141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 31548338 - 31548297
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  31548338 tttgataaaatgacataattcaatgtaatcacatgtgtcggt 31548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 5307048 - 5307115
Alignment:
Q  16 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||| | ||||| ||||| | |||||||| |||||||||||||| | ||||| ||||||||||    
T  5307048 acacggacacgtcgacactgataataatttgaaaa-atgacataattcaatgaaatcataagtgtcggt 5307115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 20873047 - 20873143
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtc 103  Q
    ||||||| ||||| |||||   |||| |||||| | ||||||||||| |||||||| |  ||||| ||||||||||||   ||||||||| ||||||    
T  20873047 acgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtc 20873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 25566840 - 25566896
Alignment:
Q  28 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  25566840 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 25566896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 10367 - 10247
Alignment:
Q  18 acggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||  ||        ||| |||   |||| |||||||||||||||| ||||||||    
T  10367 acggacacattgacacagataaaattttgacaaaatgacattattcaa--ta--------tgttggtgtcggacgcgatgcgtgtcggacagcaggacac 10278  T
Q  118 accttcaaccagaagtgtccgtgcaacagag 148  Q
    |||||||| |||||||||| |||||| ||||    
T  10277 accttcaatcagaagtgtctgtgcaagagag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 8954 - 9061
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacg--atgcgtgtcggacaccaggacacaccttcaaccagaag 132  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    | || |   || |||||||||||| |||||| ||||||| ||||||    
T  8954 gataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggt----gtcatgtcgtgtgtgtcggacaccgggacacgccttcaatcagaag 9049  T
Q  133 tgtccgtgcaac 144  Q
    |||| |||||||    
T  9050 tgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 14338536 - 14338454
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||    |||||||  ||| ||||||||| ||||||    
T  14338536 gataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 11093558 - 11093614
Alignment:
Q  17 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 73  Q
    |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||    
T  11093558 cacggacacatttacactgataataatttgaaaaaatgacataattcaaagtaatca 11093614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 34834965 - 34834869
Alignment:
Q  50 aaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacaga 147  Q
    ||||||||||||||||  ||||||| ||| |||||   ||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  34834965 aaatgacataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 49179774 - 49179719
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||| ||||||||||||| ||| ||||||||||| | ||||||||||||||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggt 49179719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 20503479 - 20503553
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 117  Q
    ||||||||||||||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  20503479 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacac 20503553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 10954966 - 10955032
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 109  Q
    ||||||||||| ||||||||||  ||||||||||||||||||   ||||||||  |||||| |||||    
T  10954966 tttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 12704715 - 12704663
Alignment:
Q  30 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||| ||||| | ||||||||||||||||||||||| ||||||| | ||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcg 12704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 26508109 - 26508165
Alignment:
Q  28 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  26508109 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 26508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 41319383 - 41319327
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaat 71  Q
    ||||||||||| | |||||  |||| | ||||||||||||||||||||||| |||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 24462329 - 24462280
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagt 78  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  24462329 gacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 40686832 - 40686761
Alignment:
Q  14 tgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 85  Q
    |||||| ||||| | ||||  ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  40686832 tgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgtcggta 40686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  99 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 145  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 38078733 - 38078665
Alignment:
Q  16 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||| ||||| | ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 38078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 46748987 - 46748915
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    |||||||||||||||||   |||||   |||||||||||||||| |||||| ||||| |||||||||| ||||    
T  46748987 gacactgacacggacacgccgacaccattaaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtc 46748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  39 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    ||||||||| ||||||||||||||||| |||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 21378556 - 21378633
Alignment:
Q  7 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    ||||||| |||| |||||||  ||||||| ||| |  |||||||||| ||||||||||  ||||| ||||||||||||    
T  21378556 acgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaattacaagtgtcggt 21378633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 24176820 - 24176873
Alignment:
Q  30 acacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcg 82  Q
    |||| ||||||||||||| ||||||||||| ||| || ||||||||||||||||    
T  24176820 acaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtcg 24176873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 24577259 - 24577190
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||||  |||||||  ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  24577259 gacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 24577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 28170389 - 28170433
Alignment:
Q  36 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 81  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||    
T  28170389 ataaaattttgaaaa-atgacataattcaatgtaataacaagtgtc 28170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 1486793 - 1486713
Alignment:
Q  4 gatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 84  Q
    |||||||||| || || |||||  |||||||| ||| | ||||||||||| ||||||||||  ||||| | ||||||||||    
T  1486793 gatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggt 1486713  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 16925593 - 16925661
Alignment:
Q  9 gacactgacacggacacattgacacagataaaattttg-aaaaaatgacataattcaaagtaatcacaa 76  Q
    ||||||||||||||||  | || || |||||||||||| ||||||| ||| ||||||| ||||||||||    
T  16925593 gacactgacacggacatgtcgataccgataaaattttgaaaaaaataacacaattcaatgtaatcacaa 16925661  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 507 - 429
Alignment:
Q  43 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacct 121  Q
    ||||||||||| ||| ||||||  ||||| ||||||||||||   |||||||| ||||||| |||||| ||||||||||    
T  507 tttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacct 429  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 18181 - 18116
Alignment:
Q  15 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    ||||| ||||| | ||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  18181 gacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 70278 - 70365
Alignment:
Q  29 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggaca 116  Q
    ||||||| ||| | ||||||||||| ||||||||||  ||||| | ||||||||||   ||||||||  |||||| ||||||||||||    
T  70278 gacacagttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggaca 70365  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 8691 - 8642
Alignment:
Q  99 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 148  Q
    ||||| |||||| |||||  ||||||| ||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagag 8642  T

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Target: scaffold0504; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 8750 - 8705
Alignment:
Q  35 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 80  Q
    ||||||||||||| |||||||||| |||||| |||| |||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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