View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_37 (Length: 362)
Name: NF8206A_low_37
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35922815 - 35922561
Alignment:
| Q |
1 |
aactttctatggccatagtgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaa |
100 |
Q |
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| T |
35922815 |
aactttctatggccatattgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttga |
35922716 |
T |
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| Q |
101 |
ggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagcc |
200 |
Q |
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| T |
35922715 |
ggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagcc |
35922616 |
T |
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| Q |
201 |
ctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaactatgttgtgta |
255 |
Q |
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| T |
35922615 |
ctttttcttgaaggtggccttcaaatgctcatttgtcaggtaactatgttgtgta |
35922561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 36202261 - 36202486
Alignment:
| Q |
19 |
tgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttat |
118 |
Q |
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| T |
36202261 |
tgataccattcttccaacaatttacaggcatcaatgttatcatgttttatgcacctgtgctatttaattccattgggtttaaggacgatgcttcacttat |
36202360 |
T |
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| Q |
119 |
gtcatctgtgataactggcgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggt |
218 |
Q |
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| T |
36202361 |
gtcggctgtcatcaccggtgttgttaatgttgttgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaaggtggt |
36202460 |
T |
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| Q |
219 |
cttcaaatgctcatttgtcaggtaac |
244 |
Q |
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| T |
36202461 |
gctcaaatgctcatatgccaggtaac |
36202486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 35490263 - 35490208
Alignment:
| Q |
21 |
attccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgt |
76 |
Q |
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|||||||||||||| ||| | || |||||||||||||| ||||||||||||||||| |
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| T |
35490263 |
attccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
35490208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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