View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_40 (Length: 356)
Name: NF8206A_low_40
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 43104601 - 43104255
Alignment:
| Q |
1 |
attgttttaagagtaaatttacctaaatttctagtaaattcacttactcatattatttggataattttcataaacttgagaggaatggtaagcttctagg |
100 |
Q |
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| T |
43104601 |
attgttttaagagtaaatttacctaaatttctagtaaattcacttacacatattatttggataattttcataaacttgagaggaatggtaagcttctagg |
43104502 |
T |
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| Q |
101 |
tttgattnnnnnnn-----ttcaaaattctgggctaatatgtgattgtgttgtcattgtttaccaattgttttttataatggtcttcatgtggtaataat |
195 |
Q |
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| T |
43104501 |
tttgatttttttcccccccttcaaaattcagggctaatatgtgattgtgttgtcattgtttaccaattgttttttataatggtcttcatgtggtaataat |
43104402 |
T |
|
| Q |
196 |
ctacattgttcatcttgtggatgcagatggtgctggtggtaagggcacttgggggaaattgctggacacagaagttgattctcacatagaccgcaatgat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43104401 |
ctacattgttcatcttgtggatgcagatggtgctggtggtaagggcacttgggggaaattgctggacacagaagttgattctcacatagaccgcaatgat |
43104302 |
T |
|
| Q |
296 |
ccaaattacgatagtggcgaggtgaagtatttttcgatcattctgat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43104301 |
ccaaattacgatagtggcgaggtgaagtatttttcgatcattctgat |
43104255 |
T |
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