View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_42 (Length: 354)
Name: NF8206A_low_42
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_42 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 59361 - 59031
Alignment:
| Q |
16 |
acatcacacacaacatagacccttctggtggtaaaacatttctcaaagcaagattacctctagttgggattcaattaagaaaaaccctccaaacaaacac |
115 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
59361 |
acatcacacacaacgtagacccttttggtggtaaaacatttctcaaagcaagattacctctagttgggattcaattaagaaaatacctccaaccaaacac |
59262 |
T |
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| Q |
116 |
aacc----------gagcaggactattccacatattttcaagcacccgtttctgcactactccccacaaatcttcaaacaacactaatatccttccaact |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
59261 |
aaccactttcgacggagcaggactattccacatattttcaagcacccgtttctccactactccccacaaatcttcacacaacactaat--ccttccaact |
59164 |
T |
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| Q |
206 |
tcaattaagccaatttcaccgagtaaaaatcattctcttctaagttccatctccacacgtcctcctcattagtccatctcgtaccctccaaatcctccaa |
305 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
59163 |
tcaagtaagccgatttcaccgagtaaaaatcattctcttctaagttccatctccacacatcctcctcattagtccatctcgtaccctccaaatcctccaa |
59064 |
T |
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| Q |
306 |
aaggctagtgaataactcttcctcccacccaaa |
338 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
59063 |
aaggctagtgaataactcttcctcccacacaaa |
59031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 31035253 - 31035582
Alignment:
| Q |
16 |
acatcacacacaacatagacccttctggtggtaaaacatttctcaaagcaagattacctctagttgggattcaattaagaaaaaccctccaaacaaacac |
115 |
Q |
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|||||||||||||| ||||| |||| |||| |||||||||| | |||||||||||| ||||||||||||| || ||||| ||||||||| ||||| | |
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| T |
31035253 |
acatcacacacaacctagacgcttccggtgataaaacatttattaaagcaagattaactctagttgggatatgatcaagaagaaccctccatccaaacgc |
31035352 |
T |
|
| Q |
116 |
aacc---------gagcaggactattccacatattttcaagcacccgtttctgcactactccccacaaatcttcaaacaacactaatatccttccaactt |
206 |
Q |
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||| |||| |||||||||||||||||||||| ||||| ||||| |||||||||||| | || |||| ||||||| ||| || |||||||| |
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| T |
31035353 |
taccactttgatggagccggactattccacatattttcaaacacccctttctccactactccccaaatatattcacacaacacaaat--ccctccaactt |
31035450 |
T |
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| Q |
207 |
caattaagccaatttcaccgagtaaaaatcattctcttctaagttccatctccacacgtcctcctcattagtccatctcgtaccctccaaatcctccaaa |
306 |
Q |
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||| ||||||||||||| | | ||| || |||||||||||| |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |
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| T |
31035451 |
caagtaagccaatttcatcaaataacaaccattctcttctagattccatctccacttatcctcctcgttaaaccacctcataccctccaaatcctccaaa |
31035550 |
T |
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| Q |
307 |
aggctagtgaataactcttcctcccacccaaa |
338 |
Q |
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|||||||| | ||||||||||||||| |||| |
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| T |
31035551 |
aggctagtaagcaactcttcctcccacacaaa |
31035582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 338
Target Start/End: Complemental strand, 24018069 - 24017769
Alignment:
| Q |
45 |
ggtaaaacatttctcaaagcaagattacctctagttgggattcaattaagaaaaaccctccaaacaaacacaacc----------gagcaggactattcc |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || || || ||||||||||| | || |||||||||| |
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| T |
24018069 |
ggtaaaacatttctcaaagcaagattacctctagttgggattcgattgagaaagactatc-aaccaaacacaaccacttttgacggtgccggactattcc |
24017971 |
T |
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| Q |
135 |
acatattttcaagcacccgtttctgcactactccccacaaatcttcaaacaacactaatatccttccaacttcaattaagccaatttcaccgagtaaaaa |
234 |
Q |
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|||||||||||| ||||||||||| | | || |||| | ||||| |||||| | ||||||| |||||| || ||| |||| |||||||||| | |
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| T |
24017970 |
acatattttcaaacacccgtttctccgccaccgcccaaacttcttctcccaacacaacc--ccttccatcttcaaataggccgatttgaccgagtaaaca |
24017873 |
T |
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| Q |
235 |
tcattctcttctaagttccatctccacacgtcctcctcattagtccatctcgtaccctccaaatcctccaaaaggctagtgaataactcttcctcccacc |
334 |
Q |
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|||| ||||||||||||||||||||| | ||||| |||| | ||| || | || ||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
24017872 |
ccattatcttctaagttccatctccactcatcctctacatttgaccaagtcatcccttccaaatcctccaaaagactagtgaccaactcttcctcccaca |
24017773 |
T |
|
| Q |
335 |
caaa |
338 |
Q |
| |
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|||| |
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| T |
24017772 |
caaa |
24017769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 338
Target Start/End: Complemental strand, 19471680 - 19471541
Alignment:
| Q |
199 |
tccaacttcaattaagccaatttcaccgagtaaaaatcattctcttctaagttccatctccacacgtcctcctcattagtccatctcgtaccctccaaat |
298 |
Q |
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||||||||||| || ||| | ||||||||| ||||| |||| |||||||| |||||||||||| | ||||||||||||| ||| | ||||||| |||| |
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| T |
19471680 |
tccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatctccactcatcctcctcattagaccaaaccataccctctaaat |
19471581 |
T |
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| Q |
299 |
cctccaaaaggctagtgaataactcttcctcccacccaaa |
338 |
Q |
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| ||| ||||||||| || ||||| ||||||||| |||| |
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| T |
19471580 |
cttcccgaaggctagtaaacaactcctcctcccacacaaa |
19471541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 19471845 - 19471793
Alignment:
| Q |
42 |
ggtggtaaaacatttctcaaagcaagattacctctagttgggattcaattaag |
94 |
Q |
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||||||| |||||| ||||| ||||||||| ||||||||||||| | |||||| |
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| T |
19471845 |
ggtggtagaacattcctcaaggcaagattaactctagttgggatacgattaag |
19471793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 338
Target Start/End: Original strand, 8504859 - 8505001
Alignment:
| Q |
197 |
cttccaacttcaattaagccaatttca-ccgagtaaaaatcattctcttctaagttccatctccacacgtcctcctcattagtccatctcgtaccctcca |
295 |
Q |
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|||||||||| || |||||| |||||| |||| ||| || |||||||||||| |||||||||||||| |||||||||| || ||| || |||||||| |
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| T |
8504859 |
cttccaactttaaataagccgatttcatccgaataataaccattctcttctagattccatctccacacatcctcctcatgagaccaccttaaaccctcca |
8504958 |
T |
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| Q |
296 |
aatcctccaaaaggctagtgaa-taactcttcctcccacccaaa |
338 |
Q |
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||||||||| || ||| |||| ||||||||| |||||| |||| |
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| T |
8504959 |
catcctccaagagacta-tgaagtaactcttcttcccacacaaa |
8505001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 49036874 - 49036950
Alignment:
| Q |
37 |
cttctggtggtaaaacatttctcaaagcaagattacctctagttgggattcaattaagaaaaaccctccaaacaaac |
113 |
Q |
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|||| |||||||||||||| ||||||||||||||| | ||| ||| || | |||||||| ||||||||| ||||| |
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| T |
49036874 |
cttccggtggtaaaacattcctcaaagcaagattatccttagatggtatacggttaagaaacaccctccaagcaaac |
49036950 |
T |
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