View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_5 (Length: 689)

Name: NF8206A_low_5
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_5
NF8206A_low_5
[»] chr8 (2 HSPs)
chr8 (540-612)||(12933811-12933883)
chr8 (563-600)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (540-612)||(14177081-14177153)
chr4 (540-654)||(28608680-28608794)
chr4 (548-601)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (533-570)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (533-570)||(796698-796735)
chr6 (533-570)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (533-570)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  540 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 612  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  563 catggagatttggaagaggagatttatatggagcaacc 600  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  540 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 612  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 654
Target Start/End: Complemental strand, 28608794 - 28608680
Alignment:
Q  540 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 638  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  639 gcaaattgaataagag 654  Q
    |||||||||| |||||    
T  28608695 gcaaattgaagaagag 28608680  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  548 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 601  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  533 gagcagttggatgtgaaaactgcatttcttcatggaga 570  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  533 gagcagttggatgtgaaaactgcatttcttcatggaga 570  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  533 gagcagttggatgtgaaaactgcatttcttcatggaga 570  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  533 gagcagttggatgtgaaaactgcatttcttcatggaga 570  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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