View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_57 (Length: 311)
Name: NF8206A_low_57
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 2466650 - 2466930
Alignment:
| Q |
5 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466650 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
2466749 |
T |
|
| Q |
105 |
actatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaat |
204 |
Q |
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||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2466750 |
act---ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaataaataaat |
2466828 |
T |
|
| Q |
205 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgacatttctcgtattattggagtataataaaataat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
2466829 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataataaaataat |
2466928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 2462602 - 2462832
Alignment:
| Q |
5 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462602 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
2462701 |
T |
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| Q |
105 |
actatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaat |
204 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2462702 |
actatgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaataaataaat |
2462783 |
T |
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| Q |
205 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
253 |
Q |
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|||| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462784 |
aaattgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3063399 - 3063274
Alignment:
| Q |
1 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063399 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacca |
3063300 |
T |
|
| Q |
101 |
ggcaactatgttggtgaaaagccata |
126 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3063299 |
ggcaactatgttggtgaaaagccata |
3063274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 2458023 - 2458154
Alignment:
| Q |
2 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
101 |
Q |
| |
|
||||||||||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| ||||||| |
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| T |
2458023 |
actcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatccaccag |
2458119 |
T |
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| Q |
102 |
gcaactatgttggtgaaaagccatactaagtgcat |
136 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
2458120 |
gcaactatgttggtcaaaagccatactaagtgcat |
2458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 2469972 - 2470100
Alignment:
| Q |
2 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
101 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
2469972 |
actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccag |
2470068 |
T |
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| Q |
102 |
gcaactatgttggtgaaaagccatactaagtg |
133 |
Q |
| |
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|||||||| |||| |||| |||||||||||| |
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| T |
2470069 |
gcaactatattggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2474242 - 2474368
Alignment:
| Q |
1 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacca |
100 |
Q |
| |
|
||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| || |
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| T |
2474242 |
tactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgacccccct |
2474338 |
T |
|
| Q |
101 |
ggcaactatgttggtgaaaagccatactaa |
130 |
Q |
| |
|
||||||||| |||| |||| ||||||||| |
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| T |
2474339 |
ggcaactatattggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
23 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
99 |
Q |
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|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2486516 - 2486576
Alignment:
| Q |
1 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
61 |
Q |
| |
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|||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486516 |
tactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 18015921 - 18016046
Alignment:
| Q |
1 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015921 |
tactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacca |
18016020 |
T |
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| Q |
101 |
ggcaactatgttggtgaaaagccata |
126 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
18016021 |
ggcaactatgttggtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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