View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_6 (Length: 670)
Name: NF8206A_low_6
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 645; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 2 - 670
Target Start/End: Original strand, 38815982 - 38816650
Alignment:
| Q |
2 |
cacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaaca |
101 |
Q |
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| T |
38815982 |
cacaatgaaggtgttggaagcgacaatgagggaaaacccaaatgccgcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaaca |
38816081 |
T |
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| Q |
102 |
gtaaaattaattttaaaaattacacttctatgactaggcttacgtttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcag |
201 |
Q |
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| T |
38816082 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcag |
38816181 |
T |
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| Q |
202 |
tgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagac |
301 |
Q |
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| T |
38816182 |
tgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagac |
38816281 |
T |
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| Q |
302 |
aaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaaca |
401 |
Q |
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| T |
38816282 |
aaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaaca |
38816381 |
T |
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| Q |
402 |
aggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccaca |
501 |
Q |
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| T |
38816382 |
aggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccaca |
38816481 |
T |
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| Q |
502 |
gcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttc |
601 |
Q |
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| T |
38816482 |
gcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttc |
38816581 |
T |
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| Q |
602 |
atattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataact |
670 |
Q |
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| T |
38816582 |
atattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataact |
38816650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 388 - 537
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
388 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
487 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
488 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
537 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 646
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
608 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
646 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 22867069 - 22866994
Alignment:
| Q |
2 |
cacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaat |
78 |
Q |
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| T |
22867069 |
cacaacgaaggtgttggaagctgcaatgaaggcaaac-taaaggccgcaattaaggcgactaggggcagaccacaat |
22866994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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