View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8206A_low_63 (Length: 304)
Name: NF8206A_low_63
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_63 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
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| [»] scaffold0230 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 16787836 - 16787548
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787836 |
tcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
16787737 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787736 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
16787637 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16787636 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagat |
16787548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 16797038 - 16796750
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| || ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
16797038 |
tcaatggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattgtca |
16796939 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796938 |
ttgaggccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaaggaacatctcattcatctttggatggctaatggacttgttacat |
16796839 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||| | ||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16796838 |
ctagaggtaatttacagatggagcatgttggtaatgggatatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagat |
16796750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 16780968 - 16780680
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || |||||||||| ||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
16780968 |
tcaatggctttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgtcc |
16780869 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
|| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16780868 |
ttaaggccgtgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacat |
16780769 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16780768 |
ctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagat |
16780680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 16987323 - 16987039
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
16987323 |
tcaatggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattgtca |
16987224 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987223 |
ctaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcatctttggatggctaatggacttgttacat |
16987124 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatc |
285 |
Q |
| |
|
||||||| || |||||||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
16987123 |
ctagaggtaatttacagatggagcatgttggtgatgaggtatggaatcaattatggcaaagatcattttttcaagaagttaaatc |
16987039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 16657881 - 16657593
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |||| ||| | | | ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
16657881 |
tcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtca |
16657782 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| || |
|
|
| T |
16657781 |
ttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggataaggaagaactcattaaactttggatggctaatggacttgttatat |
16657682 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
16657681 |
ctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagat |
16657593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 16868292 - 16868580
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||| | || ||| | | | ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
16868292 |
tcaatggacttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtca |
16868391 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16868392 |
ttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggacttgttacat |
16868491 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||| |
|
|
| T |
16868492 |
ctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaaatcaaatcagat |
16868580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 17069375 - 17069087
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| || || | ||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17069375 |
tcaatggatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgtca |
17069276 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17069275 |
ttgaggccatgttttactttctgtgttgtttttcctaaggattttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatttgttacat |
17069176 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
17069175 |
ctagaggtaatttacagatggagcatgttggtaatgagatatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagat |
17069087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 18806488 - 18806677
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
18806488 |
tcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattatca |
18806587 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
190 |
Q |
| |
|
|||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18806588 |
ctgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18806677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 279
Target Start/End: Complemental strand, 16843584 - 16843397
Alignment:
| Q |
92 |
aaattgtccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggac |
191 |
Q |
| |
|
||||| || |||| |||||||||||| || || ||||| ||||| || ||||||| ||||||||||||| || | ||||||||||||||||| |||||| |
|
|
| T |
16843584 |
aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat |
16843485 |
T |
|
| Q |
192 |
ttgttacatctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagt |
279 |
Q |
| |
|
|| || | || |||||||| ||| |||||||||| ||||| |||||||| ||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
16843484 |
ttatttcctccagaggaaatttagagatggaggaggttggcaatgaggtgtggaatgaactataccagagatcattttttcaagaagt |
16843397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 18873482 - 18873671
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||||||| |||||||| ||||||||||| |||||||| || |
|
|
| T |
18873482 |
tcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgtattgagactcagctactttaatttgaaattatca |
18873581 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
190 |
Q |
| |
|
|||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18873582 |
ctgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18873671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 279
Target Start/End: Original strand, 18870507 - 18870676
Alignment:
| Q |
110 |
tgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaa |
209 |
Q |
| |
|
||||||||||| || | |||||||| |||||||||||||||||||||||| | || || ||||||||| || |||||||| | | | || | |||| |
|
|
| T |
18870507 |
tgttttaccttttgtgaggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatggattcatctcttccattggaa |
18870606 |
T |
|
| Q |
210 |
acttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagt |
279 |
Q |
| |
|
| ||| || ||||| |||||||| |||| || |||||||||||||| | | ||||||||||||||||| |
|
|
| T |
18870607 |
atttagaggtggagcatgttggtcatgaagtgtggaatgaattatatgagagatcattttttcaagaagt |
18870676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 12718 - 12430
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12718 |
tcaatggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattgtca |
12619 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12618 |
ttgaggccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacat |
12519 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
12518 |
ctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattatttgaagaagttaaatcagat |
12430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 8376 - 8092
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
8376 |
tcaatggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattgtca |
8277 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8276 |
ttgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaaaatctcattcatctttggatggctaatggtcttgttacat |
8177 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatc |
285 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| |||||||||||||| |||| | |||| ||||||||||||||||||||||| |
|
|
| T |
8176 |
ctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcattttttcaagaagttaaatc |
8092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 17924 - 17636
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
17924 |
tcaatggctttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgtcc |
17825 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
|||||||| |||||||| || || |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
17824 |
ttgaggccctgttttactttttgtactgtttttcctaaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgttacat |
17725 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
17724 |
caagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatcagat |
17636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38939651 - 38939939
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
38939651 |
tcaatggttttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtcc |
38939750 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38939751 |
ttgaggccatgttttaatttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacat |
38939850 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
38939851 |
caagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagtcaaatcagat |
38939939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 7053558 - 7053848
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||| |||||||| |||| |||||||||| |||||| || ||||||| ||| ||||||||| | |
|
|
| T |
7053558 |
tcaatggctttctataaaggaaagcaagttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattgcca |
7053657 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
|||||||| |||||| | || || |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7053658 |
ttgaggccttgtttttctttttgtgctgtttttcccaaagattttgagatacataaggaatgcctcattcatctttggatggctaatggacttcttacat |
7053757 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagatat |
291 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
7053758 |
ctagaggaaatttacagatggagcttcttggtaatgaggtatggaatgaattatatcaaagatcattttttcaagaagttaaatctgatat |
7053848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 9002 - 8736
Alignment:
| Q |
19 |
ggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtccttgaggccatgttttacc |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9002 |
ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact |
8903 |
T |
|
| Q |
119 |
ttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaaacttacaga |
218 |
Q |
| |
|
|| || ||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8902 |
ttttgtgctgtttttcctaaagattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacaga |
8803 |
T |
|
| Q |
219 |
tggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatc |
285 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||| |
|
|
| T |
8802 |
tggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatc |
8736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37359 - 37071
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |||| ||| | | ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
37359 |
tcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgtca |
37260 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
37259 |
ttgaggccatgttttactttttgtgctgtttttcctaaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttgcat |
37160 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
37159 |
ctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagat |
37071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 13377960 - 13377673
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || ||||||| || ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13377960 |
tcaatggctttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtcc |
13377861 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacat |
200 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13377860 |
ttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgttacat |
13377761 |
T |
|
| Q |
201 |
ctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaagtcattttttcaagaagttaaatcagat |
289 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
13377760 |
ctagaggaaacttaca-acggagcatgttggtaatgaggtatgggatgagttatgccaaagatcattttttcaagaagttaaatcagat |
13377673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9222 - 9033
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || ||| ||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
9222 |
tcaatggctttctgtaaaggacagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattatca |
9123 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
190 |
Q |
| |
|
||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| || || ||||||||| ||||||||||| |
|
|
| T |
9122 |
ctgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagcactgatccatctttggttggctaatgga |
9033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 4541 - 4352
Alignment:
| Q |
1 |
tcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtcc |
100 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||| |||||||||||| ||||||||||| || ||||| || |
|
|
| T |
4541 |
tcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtttgttttgagactcagctactttaatttaaaattatca |
4442 |
T |
|
| Q |
101 |
ttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
190 |
Q |
| |
|
||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
4441 |
ctgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
4352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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