View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_76 (Length: 286)

Name: NF8206A_low_76
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_76
NF8206A_low_76
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-239)||(36051-36290)
[»] chr2 (5 HSPs)
chr2 (1-239)||(39281069-39281307)
chr2 (12-239)||(861498-861728)
chr2 (133-239)||(4416270-4416376)
chr2 (49-91)||(24207316-24207358)
chr2 (49-91)||(37021252-37021294)
[»] chr8 (6 HSPs)
chr8 (1-239)||(37802159-37802397)
chr8 (1-239)||(44527312-44527550)
chr8 (12-183)||(15144938-15145115)
chr8 (35-106)||(9185216-9185287)
chr8 (49-91)||(27406205-27406247)
chr8 (49-97)||(8655313-8655361)
[»] chr4 (8 HSPs)
chr4 (1-239)||(37480231-37480469)
chr4 (13-239)||(26296343-26296573)
chr4 (12-106)||(25994340-25994434)
chr4 (12-95)||(10543363-10543446)
chr4 (13-97)||(10763428-10763512)
chr4 (223-258)||(37480471-37480506)
chr4 (30-75)||(13450430-13450475)
chr4 (148-211)||(27382661-27382724)
[»] chr1 (6 HSPs)
chr1 (1-239)||(51544829-51545067)
chr1 (13-97)||(47268591-47268675)
chr1 (48-91)||(1443264-1443307)
chr1 (48-91)||(47012419-47012462)
chr1 (49-91)||(9121020-9121062)
chr1 (49-81)||(33601850-33601882)
[»] chr7 (4 HSPs)
chr7 (12-183)||(23963080-23963257)
chr7 (12-106)||(48705001-48705095)
chr7 (16-97)||(57200-57281)
chr7 (199-239)||(23963017-23963057)
[»] chr6 (6 HSPs)
chr6 (142-239)||(25171419-25171515)
chr6 (31-97)||(13612769-13612835)
chr6 (13-97)||(29078175-29078259)
chr6 (13-97)||(29113148-29113232)
chr6 (48-91)||(32455228-32455271)
chr6 (12-75)||(4314067-4314131)
[»] scaffold0204 (1 HSPs)
scaffold0204 (203-239)||(29845-29881)
[»] chr3 (3 HSPs)
chr3 (11-99)||(26448654-26448742)
chr3 (13-97)||(41020196-41020280)
chr3 (12-106)||(30501847-30501941)
[»] chr5 (3 HSPs)
chr5 (48-91)||(40781294-40781337)
chr5 (12-106)||(6115453-6115547)
chr5 (49-91)||(29621118-29621160)


Alignment Details
Target: scaffold0092 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36051 - 36290
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36051 tcaaccgccattttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaacaaccaccatgatgcaggattaacg 36150  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaa-taaccctttttggtaa 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  36151 tgatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaattaaccctttttagtaa 36250  T
Q  200 ctattttaatcaaccactaatcttgttcataactactcta 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36251 ctattttaatcaaccactaatcttgttcataactactcta 36290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39281307 - 39281069
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  39281307 tcaactgccattttttcccacacacaaatttcaccacgaacataatttagcctctgatactcatctcgctctaaacaaccaccatgatgcaggattaacg 39281208  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaac 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39281207 tgatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttagtaac 39281108  T
Q  201 tattttaatcaaccactaatcttgttcataactactcta 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39281107 tattttaatcaaccactaatcttgttcataactactcta 39281069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 861498 - 861728
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggata------ 105  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||| | ||||          
T  861498 tttttcccacacacaaaactcaccacgaacataagttagcctccgatacttatctcgctctaaacaaccaccatgatgcatgattaatgtgatattgtct 861597  T
Q  106 tccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaactattt 205  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||| ||| |  | |     ||  |||    
T  861598 tccatcctagagattttgcaatgcatcagtcataataacaatcaaaataacataaaaatgcaaatcatcactacaaattaaacaatct---ataccgttt 861694  T
Q  206 taatcaaccactaatcttgttcataactactcta 239  Q
    ||||||||||||||||||||||||||||||||||    
T  861695 taatcaaccactaatcttgttcataactactcta 861728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 4416270 - 4416376
Alignment:
Q  133 agtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaacta-ttttaatcaaccactaatcttgttcataa 231  Q
    ||||||| |||||| ||||  || ||||||||| ||||||| |||||||||||| |||||||  ||| |  ||||||||||||||| || | ||||||||    
T  4416270 agtcataatcacaagcaaaccaaaataaaaatgtaaatcat-agtacaaaataaaccttttttataaattgttttaatcaaccacttatttcgttcataa 4416368  T
Q  232 ctactcta 239  Q
    ||||||||    
T  4416369 ctactcta 4416376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 24207316 - 24207358
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  24207316 agcctccgatactcatctcgctctaaacaaccaccgtgatgca 24207358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 37021294 - 37021252
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    |||||||| |||||||||||||||||| ||||||| |||||||    
T  37021294 agcctccggtactcatctcgctctaaacaaccaccgtgatgca 37021252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37802397 - 37802159
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  37802397 tcaaccgccattttttcccacacacaaatttcaccacgaacataatttagccttcgatactcatctcgctctaaacaaccaccatgatgcaggattaacg 37802298  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaac 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||    
T  37802297 tgatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgtaaatcatcagtacagagtaaccctttttagtaac 37802198  T
Q  201 tattttaatcaaccactaatcttgttcataactactcta 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37802197 tattttaatcaaccactaatcttgttcataactactcta 37802159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44527550 - 44527312
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  44527550 tcaaccgccattttttcccacacacaaatttcaccacgaacataatttagcctctgatactcatctcgctctaaacaaccaccatgatgcaggattaacg 44527451  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaac 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  44527450 tgatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacacaaaaatgcaaagcatcagtacaaaataaccctttttagtaac 44527351  T
Q  201 tattttaatcaaccactaatcttgttcataactactcta 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  44527350 tattttaaccaaccactaatcttgttcataactactcta 44527312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 15144938 - 15145115
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggata------ 105  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||          
T  15144938 tttttcccacacacagaactcaccacgaacataagttagcctccgatactcatctcgctctaaacaaccaccatgatgcaagattaatgtgatattgtct 15145037  T
Q  106 tccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaa 183  Q
    |||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  15145038 tccatcatagagattttgcaatgcatcagtcataagcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaa 15145115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 9185287 - 9185216
Alignment:
Q  35 cacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat 106  Q
    |||||||||| |  |||||  ||||||||||||||||||||  |||||  |||||||||||||||| |||||    
T  9185287 cacgaacatattgcagcctgtgatactcatctcgctctaaaccaccactgtgatgcaggattaacgtgatat 9185216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 27406205 - 27406247
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  27406205 agccttcgatactcatctcgctctaaaaaaccaccgtgatgca 27406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 8655361 - 8655313
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  8655361 agcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 8655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37480231 - 37480469
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37480231 tcaaccaccattttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaacaaccaccatgatgcaggattaacg 37480330  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaac 200  Q
     |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  37480331 tgatatccatcctacagattttgtaatgcatcaatcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttagtaat 37480430  T
Q  201 tattttaatcaaccactaatcttgttcataactactcta 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37480431 tattttaatcaaccactaatcttgttcataactactcta 37480469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 26296343 - 26296573
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat------ 106  Q
    |||||||| ||||| | ||| ||||||||||| |  | ||||||||||||||||||||||||| ||||||||||||||| ||| || | |||||          
T  26296343 ttttcccaaacacagaattc-ccacgaacatattgcaacctccgatactcatctcgctctaaacaaccaccatgatgcatgatcaatgtgatattgtctt 26296441  T
Q  107 ccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataa-ccctttttggtaactattt 205  Q
    |||||||   |||||||| |  ||| ||||||| |||||| ||||| ||||||||||||||||||| ||  ||||||||| ||||||||   || | |||    
T  26296442 ccatcctggggattttgccaa-cattagtcataatcacaagcaaaacaacataaaaatgcaaatca-catgacaaaataagccctttttataaattgttt 26296539  T
Q  206 taatcaaccactaatcttgttcataactactcta 239  Q
    ||||||||||||||| | ||||||||||||||||    
T  26296540 taatcaaccactaatttcgttcataactactcta 26296573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 25994434 - 25994340
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat 106  Q
    ||||||||| ||||| | ||||||||||||||| |  |||||| ||||||||||||||||||||  |||||||||||||||||||| || |||||    
T  25994434 tttttcccaaacacagaattcaccacgaacatattgcagcctctgatactcatctcgctctaaaccaccaccatgatgcaggattagcgtgatat 25994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 10543446 - 10543363
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggat 95  Q
    |||||| || ||||||| ||||||||||||||| |  |||||| |||||||||||||||||||| | |||||||||||||||||    
T  10543446 tttttctcaaacacaaaattcaccacgaacatattcaagcctctgatactcatctcgctctaaacacccaccatgatgcaggat 10543363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 10763512 - 10763428
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||| ||||| | |||||| | |||||| |  |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  10763512 ttttcccatacacagaattcaccgccaacatattgcagcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 10763428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 37480471 - 37480506
Alignment:
Q  223 tgttcataactactctataaaaacatgcaattttta 258  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37480471 tgttcataactactctataaaaacatgtaattttta 37480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 13450430 - 13450475
Alignment:
Q  30 ttcaccacgaacataatttagcctccgatactcatctcgctctaaa 75  Q
    ||||||||||||||| |  | |||||||||||||||||||||||||    
T  13450430 ttcaccacgaacatattgcatcctccgatactcatctcgctctaaa 13450475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 27382724 - 27382661
Alignment:
Q  148 caaaagaacataaaaatgcaaatcatcagtacaaaat-aaccctttttggtaactattttaatca 211  Q
    ||||| |||||||||||| |||||| ||||||||||| ||||||||||   ||||||||||||||    
T  27382724 caaaacaacataaaaatgtaaatca-cagtacaaaataaaccctttttataaactattttaatca 27382661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51545067 - 51544829
Alignment:
Q  1 tcaaccgccaatttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacg 100  Q
    |||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  51545067 tcaaccaccattttttcccacacacaattttcaccacaaacataatttagcctccgatattcatctcgctctaaacaaccaccatgatgcaggattaacg 51544968  T
Q  101 ggatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaac 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  51544967 tgatatccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcggtacaaaataaccctttttagtaac 51544868  T
Q  201 tattttaatcaaccactaatcttgttcataactactcta 239  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  51544867 tattttaatcaaccactaatcttcttcataactactcta 51544829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 47268591 - 47268675
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||| ||||| | |||||| | |||||| |  |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  47268591 ttttcccatacacagaattcaccgccaacatattgcagcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 47268675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 1443307 - 1443264
Alignment:
Q  48 tagcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  1443307 tagcctccggtactcatctcgctctaaacaaccaccgtgatgca 1443264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 47012419 - 47012462
Alignment:
Q  48 tagcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  47012419 tagcctccggtactcatctcgctctaaacaaccaccgtgatgca 47012462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 9121020 - 9121062
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    |||||||| |||||||||||||||||| ||||||| |||||||    
T  9121020 agcctccggtactcatctcgctctaaacaaccaccgtgatgca 9121062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 33601850 - 33601882
Alignment:
Q  49 agcctccgatactcatctcgctctaaataacca 81  Q
    ||||||||||||||||||||||||||| |||||    
T  33601850 agcctccgatactcatctcgctctaaacaacca 33601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 23963257 - 23963080
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat----- 106  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||||| | |||||         
T  23963257 tttttcccacacacagaactcaccacgaacataagttagcctccgatactcatctcactctaaacaaccaccatgatgcaagattaatgtgatattgtct 23963158  T
Q  107 -ccatcctacagattttgcaatgcatcagtcatattcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaa 183  Q
     |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  23963157 tccatcctagagattttgcaatgcatcagtcataagcacaatcaaaagaacataaaaatgcaaatcatcagtacaaaa 23963080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 48705095 - 48705001
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat 106  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||| ||||||||||| ||||||||   ||||| ||||| |||||||||| |||||    
T  48705095 tttttcccaaacacataattcaccacgaacatattttagcctctgatactcatcttgctctaaaccgccaccgtgatggaggattaacgtgatat 48705001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 57281 - 57200
Alignment:
Q  16 tcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    ||||| |||||||  ||||||||||| || | |||||| | ||||||||||||||||||| ||||||| ||||||| |||||    
T  57281 tcccaaacacaaaactcaccacgaacgtattgtagccttcaatactcatctcgctctaaacaaccaccgtgatgcaagatta 57200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 23963057 - 23963017
Alignment:
Q  199 actattttaatcaaccactaatcttgttcataactactcta 239  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  23963057 actattttaatcaaccaataatcttgttcataactactcta 23963017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 25171419 - 25171515
Alignment:
Q  142 cacaatcaaaagaacataaaaatgcaaatcatcagtacaaaataaccctttttggtaactattttaatcaaccactaatcttgttcataactactcta 239  Q
    ||||| ||||| |||||||||||| ||||| |||||||||||||| || ||||   |||| ||||||||||||||| || | ||||||||||||||||    
T  25171419 cacaagcaaaacaacataaaaatgtaaatc-tcagtacaaaataaacccttttataaactgttttaatcaaccacttatttcgttcataactactcta 25171515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 13612769 - 13612835
Alignment:
Q  31 tcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    ||||||||||| || |  |||||||||||||||||| |||||||| ||||||| ||||||| |||||    
T  13612769 tcaccacgaacgtattgcagcctccgatactcatcttgctctaaacaaccaccgtgatgcaagatta 13612835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 29078259 - 29078175
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||| ||||| | |||||| | |||||| |  |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  29078259 ttttcccatacacagaattcaccgccaacatattgcagcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 29078175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 29113232 - 29113148
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||| ||||| | |||||| | |||||| |  |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  29113232 ttttcccatacacagaattcaccgccaacatattgcagcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 29113148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 32455228 - 32455271
Alignment:
Q  48 tagcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  32455228 tagcctccggtactcatctcgctctaaacaaccaccgtgatgca 32455271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 4314067 - 4314131
Alignment:
Q  12 tttttccca-cacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaa 75  Q
    ||||||||| |||||||| ||||||  ||||||| |   ||||||||||||||||||||||||||    
T  4314067 tttttcccaacacacaaaattcacctagaacatattgctgcctccgatactcatctcgctctaaa 4314131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 29845 - 29881
Alignment:
Q  203 ttttaatcaaccactaatcttgttcataactactcta 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  29845 ttttaatcaaccactaatcttgttcataactactcta 29881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 26448654 - 26448742
Alignment:
Q  11 atttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaac 99  Q
    |||||||||| ||||| | ||||||||||||||| |  |  ||| || ||||||||||||||| |  ||||||||||||||||||||||    
T  26448654 atttttcccagacacagaattcaccacgaacatattgcaatctctgaaactcatctcgctctacactaccaccatgatgcaggattaac 26448742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 41020196 - 41020280
Alignment:
Q  13 ttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggatta 97  Q
    |||||||| ||||| | |||||| | |||||| |  |||||||||| ||||| |||| |||||| ||||||||||||||| ||||    
T  41020196 ttttcccatacacagaattcaccgccaacatattgcagcctccgattctcatttcgcactaaatcaccaccatgatgcagtatta 41020280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 30501847 - 30501941
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat 106  Q
    ||||||| | ||||| | ||||||||||||||| |  | |||| ||||||||||||||||||||  |||||  |||||| |||||| || |||||    
T  30501847 tttttccaaaacacagaattcaccacgaacatattacaacctctgatactcatctcgctctaaaccaccacggtgatgccggattagcgagatat 30501941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 40781337 - 40781294
Alignment:
Q  48 tagcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  40781337 tagcctccggtactcatctcgctctaaacaaccaccgtgatgca 40781294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 6115547 - 6115453
Alignment:
Q  12 tttttcccacacacaaatttcaccacgaacataatttagcctccgatactcatctcgctctaaataaccaccatgatgcaggattaacgggatat 106  Q
    ||||||||| ||||  | ||||||||||||||| |  |||||| ||||||||||| ||||||||    |||||||||| ||||||| || |||||    
T  6115547 tttttcccaaacacggaattcaccacgaacatattgaagcctctgatactcatcttgctctaaaccctcaccatgatgtaggattagcgtgatat 6115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 29621118 - 29621160
Alignment:
Q  49 agcctccgatactcatctcgctctaaataaccaccatgatgca 91  Q
    |||||||| |||||||||||||||||| ||||||| |||||||    
T  29621118 agcctccggtactcatctcgctctaaacaaccaccgtgatgca 29621160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University