View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_78 (Length: 285)

Name: NF8206A_low_78
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_78
NF8206A_low_78
[»] chr3 (6 HSPs)
chr3 (12-269)||(11897148-11897405)
chr3 (11-269)||(26432588-26432846)
chr3 (84-168)||(23424570-23424654)
chr3 (11-165)||(38647179-38647333)
chr3 (11-126)||(53608336-53608451)
chr3 (77-126)||(49149802-49149851)
[»] chr8 (4 HSPs)
chr8 (12-269)||(23132475-23132732)
chr8 (18-168)||(26587230-26587380)
chr8 (106-264)||(14760016-14760174)
chr8 (11-39)||(38348466-38348494)
[»] chr1 (5 HSPs)
chr1 (12-269)||(20284849-20285106)
chr1 (10-177)||(50236550-50236717)
chr1 (10-165)||(50451893-50452048)
chr1 (68-126)||(23465403-23465461)
chr1 (14-123)||(1524969-1525078)
[»] chr2 (11 HSPs)
chr2 (12-269)||(14653570-14653827)
chr2 (16-165)||(26791322-26791471)
chr2 (11-162)||(35135219-35135370)
chr2 (11-162)||(40328174-40328325)
chr2 (68-177)||(16322502-16322611)
chr2 (11-162)||(3779048-3779199)
chr2 (89-165)||(573266-573342)
chr2 (12-150)||(19265413-19265551)
chr2 (84-170)||(42403209-42403295)
chr2 (20-165)||(177504-177649)
chr2 (114-165)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (75-165)||(75967-76057)
[»] chr4 (4 HSPs)
chr4 (11-162)||(54477407-54477558)
chr4 (16-168)||(46784469-46784621)
chr4 (84-165)||(3881787-3881868)
chr4 (11-102)||(33803974-33804065)
[»] chr5 (3 HSPs)
chr5 (59-165)||(32874457-32874563)
chr5 (11-165)||(7817131-7817285)
chr5 (68-170)||(6641008-6641110)
[»] chr6 (4 HSPs)
chr6 (68-168)||(24990660-24990760)
chr6 (11-168)||(24893833-24893990)
chr6 (58-165)||(27852952-27853059)
chr6 (68-174)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (68-171)||(16769956-16770059)
chr7 (68-167)||(27781628-27781727)
chr7 (92-162)||(1353794-1353864)
chr7 (20-165)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  12 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  112 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  212 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  |||||||| |||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacc 210  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || |||  |||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  211 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 269  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  84 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 168  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  | |||||| |||||||| || |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  111 tccgacaaggtgatcc 126  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  77 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 126  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  12 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcct 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  112 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  212 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 269  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 26587230 - 26587380
Alignment:
Q  18 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 117  Q
    ||||||| |||||||||||||||||  ||||  |||  | | | || ||||| || || ||||| ||||| || ||||||||| ||||||||||||||||    
T  26587230 ccatcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgaca 26587329  T
Q  118 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 168  Q
    |||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587330 aggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  106 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgg 205  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  206 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 264  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 38348466 - 38348494
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattg 39  Q
    |||||||||||||||||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattg 38348494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  12 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  112 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 211  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  212 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  10 ggacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggc 109  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||||||||||||| |||| |||||||||||| ||||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  110 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 177  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  10 ggacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatgg 108  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | ||||| || |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  109 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 126  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 1524969 - 1525078
Alignment:
Q  14 atcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctcc 113  Q
    ||||||||||| |||||||||||||| ||  | ||||||   | |||||| |||||||| || ||||| || || |||||||||||||| || || || |    
T  1524969 atcaccatcaaactcatcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttc 1525068  T
Q  114 gacaaggtga 123  Q
    | ||||||||    
T  1525069 ggcaaggtga 1525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  12 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcct 111  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  112 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 211  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  212 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 269  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  16 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 115  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  116 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 162  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 162  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  168 cagctgctat 177  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 3779199 - 3779048
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  || | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 162  Q
    | || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  89 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 19265413 - 19265551
Alignment:
Q  12 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcct 111  Q
    |||| |||||||| |||||||||||||| ||  | || || || |||||  || | ||||| || |||||| |  | |||||||||||| ||||||| ||    
T  19265413 acattaccatcaaactcatcatgcattgtgttacctcaccaagctactccttgttatggaatggaaacaagctctctcctttcaagcctactcatggact 19265512  T
Q  112 ccgacaaggtgatccgttgtccccttatcttttcatcct 150  Q
     || |||||||| ||| |||| |||||||||||||||||    
T  19265513 tcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  84 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 170  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  20 atcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 119  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  120 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  114 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  75 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 162  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  16 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 115  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | |||||||| || || || |||||||||||||| ||| ||||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  116 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 168  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  84 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttc 102  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  |||||||| || ||||| || |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  59 tctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 158  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  159 aaaagct 165  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcc 110  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  111 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  168 cag 170  Q
    |||    
T  6641010 cag 6641008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  168 c 168  Q
    |    
T  24990660 c 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  11 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggc 109  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||  | ||||| || |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  110 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 168  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  58 ctctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 157  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  158 gaaaagct 165  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  168 cagctgc 174  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  168 cagc 171  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 27781727 - 27781628
Alignment:
Q  68 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 167  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  92 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 162  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  20 atcaagctcatcatgcattgcgtagcttctcctagttactctatgctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 119  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||  | ||||||||||| || ||  | ||| ||||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  120 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 165  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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