View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_79 (Length: 284)
Name: NF8206A_low_79
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 48706675 - 48706846
Alignment:
| Q |
7 |
catcgacccaaaagaaaa-ttgatttatttaaaccgtaacgtgtttcatgatattttgtgaacaaagacttcttgatatagtatttacgtgcgattcctt |
105 |
Q |
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| T |
48706675 |
catcgacccaaaagaaaaattgatttatttaaaccgtaacgtgtttcatgatattttgtgaacaaagacttcttgatatagaatttacgtgctattcctt |
48706774 |
T |
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| Q |
106 |
cctgcatctagttgtagaaaatgggagtgttggacttggaaggaagtgcggataacaaaacaaaaatattta |
177 |
Q |
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| T |
48706775 |
catgcatatagttatagaaaatgggagtgttggacttggaaggaagtgcggttaacaaaacaaaaatattta |
48706846 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 48707561 - 48707623
Alignment:
| Q |
175 |
ttaaggtcaaacaaacaaactgcatttgaaatgctgctctgtagatgagggacaaaccttcacacata |
242 |
Q |
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| T |
48707561 |
ttaaggtcaaacaaacaaactgca-----aatgctgctctgtagatgagggacaaaccttcacacata |
48707623 |
T |
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