View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_81 (Length: 283)

Name: NF8206A_low_81
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_81
NF8206A_low_81
[»] chr6 (27 HSPs)
chr6 (20-283)||(5688749-5689018)
chr6 (20-283)||(5177919-5178177)
chr6 (20-283)||(5279744-5280008)
chr6 (160-270)||(5242504-5242614)
chr6 (136-271)||(5126597-5126732)
chr6 (58-283)||(5065338-5065564)
chr6 (160-269)||(5427094-5427203)
chr6 (168-283)||(5398226-5398341)
chr6 (165-283)||(5346209-5346327)
chr6 (162-266)||(5100812-5100916)
chr6 (162-266)||(5135913-5136017)
chr6 (167-283)||(5180773-5180889)
chr6 (151-272)||(5098402-5098523)
chr6 (162-283)||(5156007-5156128)
chr6 (162-283)||(5372277-5372398)
chr6 (164-265)||(23127306-23127407)
chr6 (162-283)||(5351580-5351701)
chr6 (160-283)||(5352855-5352978)
chr6 (162-283)||(2939095-2939216)
chr6 (167-272)||(5283223-5283328)
chr6 (160-271)||(5072674-5072785)
chr6 (167-261)||(5439213-5439307)
chr6 (169-278)||(5253718-5253827)
chr6 (193-283)||(5334365-5334455)
chr6 (164-278)||(5124439-5124553)
chr6 (167-272)||(5256113-5256218)
chr6 (167-278)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (139-271)||(4122615-4122747)
chr4 (89-267)||(25569036-25569217)
chr4 (127-272)||(4132577-4132719)
chr4 (162-272)||(4319296-4319406)
chr4 (160-206)||(7884147-7884193)
chr4 (160-205)||(4346621-4346666)
chr4 (160-205)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (168-271)||(47985393-47985496)
chr3 (168-271)||(48003967-48004070)
chr3 (168-271)||(47994680-47994783)
chr3 (168-271)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (160-283)||(36212913-36213036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (169-265)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 5688749 - 5689018
Alignment:
Q  20 tcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccacta---cacac 113  Q
    |||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  5688749 tcattttcatcaccactactaccaacaatgacattgtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccactactacacac 5688848  T
Q  114 aatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5688849 aatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttc 5688948  T
Q  214 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688949 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcat 5689018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 5178177 - 5177919
Alignment:
Q  20 tcattttcatcaccactactaacaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatat 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||      
T  5178177 tcattttcatcaccactactaacaatgacattgtaatcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaat-- 5178080  T
Q  119 cattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaa 218  Q
        ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5178079 ----ttcttcttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaa 5177984  T
Q  219 aacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcat 283  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5177983 aacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcat 5177919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 5280008 - 5279744
Alignment:
Q  20 tcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaa 115  Q
    |||||||||||||||||||||   |||||||||| ||| |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||    
T  5280008 tcattttcatcaccactactactaacaatgacattgtattcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaa 5279909  T
Q  116 tatcattttcttcttgttcttgaca---ttgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 212  Q
    |      ||||||||||||||| ||   ||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279908 t------ttcttcttgttcttggcaatattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 5279815  T
Q  213 gtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcat 283  Q
     |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5279814 ctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcat 5279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 5242504 - 5242614
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 259  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||||||     
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttc 5242603  T
Q  260 atactactctc 270  Q
    |||||||||||    
T  5242604 atactactctc 5242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 5126597 - 5126732
Alignment:
Q  136 tgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctcca 235  Q
    |||||||||| |||| ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||  ||||| ||| |    
T  5126597 tgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaa 5126696  T
Q  236 ctttgttacaaggttctatacttgatactactctct 271  Q
    ||||||||| || |||||||||||||||||||||||    
T  5126697 ctttgttaccagcttctatacttgatactactctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 58 - 283
Target Start/End: Original strand, 5065338 - 5065564
Alignment:
Q  58 ttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttca 156  Q
    |||||||| |||||||| ||| | || | ||||||||| ||||||||| ||||  |||||| |||| |  |||||| | ||||| | ||||   ||||||    
T  5065338 ttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttca 5065437  T
Q  157 cggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatac 256  Q
       |||||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||  |||||  |||||||| || | |||||| ||||    
T  5065438 gcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatac 5065537  T
Q  257 ttgatactactctctgtccctcttcat 283  Q
    |||||||||||||||| ||||| ||||    
T  5065538 ttgatactactctctgcccctcctcat 5065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 5427203 - 5427094
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 259  Q
    |||||||||||||||||||||||||||  ||| ||| |||||| ||||| ||| ||||||||| |||| ||||||| |||||||| ||||||||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttg 5427104  T
Q  260 atactactct 269  Q
    ||||||||||    
T  5427103 atactactct 5427094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 5398341 - 5398226
Alignment:
Q  168 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||||||||| |||||||||||||| ||||||||||||||| | || || |||||| | |||||||| |||||||||| |||||||||||||||||||||     
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
Q  268 ctctgtccctcttcat 283  Q
    || || ||||||||||    
T  5398241 ctttgcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 5346327 - 5346209
Alignment:
Q  165 ttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatact 264  Q
    ||||||||||| |||||||| || ||| ||||||||||||||||| || |||| ||||   ||||||||||||||||||| ||||||||||||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  265 actctctgtccctcttcat 283  Q
    |||||||| ||||| ||||    
T  5346227 actctctggccctcctcat 5346209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 5100812 - 5100916
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  262 actac 266  Q
    |||||    
T  5100912 actac 5100916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 5135913 - 5136017
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  262 actac 266  Q
    |||||    
T  5136013 actac 5136017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 5180773 - 5180889
Alignment:
Q  167 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 266  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  267 tctctgtccctcttcat 283  Q
     ||||| ||||||||||    
T  5180873 cctctgaccctcttcat 5180889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 5098523 - 5098402
Alignment:
Q  151 ttttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggtt 250  Q
    |||||||  ||| ||||||||||||| |||||||||| ||| || ||||||||||||| ||| || ||||||  ||  |||||||||||||||| |||||    
T  5098523 ttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggtt 5098424  T
Q  251 ctatacttgatactactctctg 272  Q
    |||||||||||| ||| |||||    
T  5098423 ctatacttgatattaccctctg 5098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 5156007 - 5156128
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||    | || |||||| ||   |||||||||||||||| |||||||| |||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgat 5156106  T
Q  262 actactctctgtccctcttcat 283  Q
    ||||| ||||| ||||||||||    
T  5156107 actaccctctgcccctcttcat 5156128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 5372398 - 5372277
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | || || | |||| ||   | |||||||||||||| |||||||| |||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgat 5372299  T
Q  262 actactctctgtccctcttcat 283  Q
    ||||| ||||| ||||||||||    
T  5372298 actaccctctgcccctcttcat 5372277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  164 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 263  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| || ||||||||   ||||||||||| |||||||| |||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  264 ta 265  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 5351701 - 5351580
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | || || |||||| |||  ||||||||||||||||  |||||||||||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  262 actactctctgtccctcttcat 283  Q
    ||||  ||||| ||||| ||||    
T  5351601 actaacctctgcccctcctcat 5351580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 5352855 - 5352978
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 259  Q
    ||||||| ||||||||| ||||||| |||||| |||||||| |||||||  || || ||||||  ||| ||||| ||||||| || ||| || |||||||    
T  5352855 attggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttg 5352954  T
Q  260 atactactctctgtccctcttcat 283  Q
    ||||||||||||| ||||| ||||    
T  5352955 atactactctctgcccctcctcat 5352978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 2939216 - 2939095
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || | || || | |||| ||   |||||||||||||||| ||||| || |||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgat 2939117  T
Q  262 actactctctgtccctcttcat 283  Q
    ||||| ||||| || |||||||    
T  2939116 actaccctctgcccttcttcat 2939095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 5283223 - 5283328
Alignment:
Q  167 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 266  Q
    |||||||||| ||||||| || ||| |||||||||||||||| ||| ||||||||| | |  ||||||||||||||||  ||||| |||||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  267 tctctg 272  Q
     |||||    
T  5283323 cctctg 5283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 5072674 - 5072785
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 259  Q
    |||| |||||| |||| |||||||| | |||| || |||||||||||| |||| |||| ||||   ||||||||||||| ||||| ||| ||||||||||    
T  5072674 attgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttg 5072773  T
Q  260 atactactctct 271  Q
    |||||| |||||    
T  5072774 atactaatctct 5072785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 5439307 - 5439213
Alignment:
Q  167 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    ||||||||||||||||| ||| ||| || ||  |||||||| | || |  |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgat 5439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  169 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 268  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||| |||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  269 tctgtccctc 278  Q
    | || |||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 5334455 - 5334365
Alignment:
Q  193 ttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcat 283  Q
    ||||||| ||||||| | || || |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  ||||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcat 5334365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 5124439 - 5124553
Alignment:
Q  164 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 263  Q
    ||||||||||||  | ||| | |||||| | |||||||||||| | ||| | ||||||| ||||||  |||||||| |||| |||||||||||| |||||    
T  5124439 gttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatac 5124538  T
Q  264 tactctctgtccctc 278  Q
    || ||| || |||||    
T  5124539 taatctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 5256113 - 5256218
Alignment:
Q  167 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 266  Q
    |||||||||| | ||||| || ||| ||||||||||||||| | || |  |||||| | || ||||||||||||||||  ||||| |||||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  267 tctctg 272  Q
     |||||    
T  5256213 cctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 5448905 - 5448794
Alignment:
Q  167 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 266  Q
    |||||||||| ||||| |||  ||| |||| |||| ||||| | || || |||||| |||| | |||||||||||| |  |||||||||||||||||||     
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaa 5448806  T
Q  267 tctctgtccctc 278  Q
     ||||| |||||    
T  5448805 cctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 4122615 - 4122747
Alignment:
Q  139 cattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactt 238  Q
    |||||||| || ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| ||||||||    
T  4122615 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactt 4122714  T
Q  239 tgttacaaggttctatacttgatactactctct 271  Q
    ||| || |||||| ||| ||||||| |||||||    
T  4122715 tgtcaccaggttccatatttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 267
Target Start/End: Complemental strand, 25569217 - 25569036
Alignment:
Q  89 attcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgt 188  Q
    |||||| |||||||||| || | |||||| |||||||||||  |  ||||| |||||||||  |||| |  ||| ||||||| |||||||||||||||||    
T  25569217 attcattttcatcaccaataaaaacaatagcattttcttctgatgtttgactttgctccattatttcgccaattagttcatcgtatacgagataaactgt 25569118  T
Q  189 tgttttcttcacaatgaaaccgttg---tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||| ||||||||  |||||| |      ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  25569117 tgtattcttcactttgaaactgcgccactcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactact 25569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 4132577 - 4132719
Alignment:
Q  127 tcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaa 226  Q
    |||||| | ||||||||| ||| ||||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||    
T  4132577 tcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aa 4132673  T
Q  227 caacctccactttgttacaaggttctatacttgatactactctctg 272  Q
    ||| ||| ||||||| || |||||| ||| ||||||||||||||||    
T  4132674 caatctcgactttgtcaccaggttccatatttgatactactctctg 4132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 4319296 - 4319406
Alignment:
Q  162 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 261  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||||| |||||| |||| || |||||| ||| ||| |    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgtt 4319395  T
Q  262 actactctctg 272  Q
    || ||||||||    
T  4319396 acaactctctg 4319406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 7884147 - 7884193
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaa 206  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  7884147 attggttcatcatagacaagataaattgttgttttcttcacaatgaa 7884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 4346666 - 4346621
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatga 205  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4346666 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 4362855 - 4362810
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatga 205  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4362855 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 47985393 - 47985496
Alignment:
Q  168 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  268 ctct 271  Q
    ||||    
T  47985493 ctct 47985496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 48003967 - 48004070
Alignment:
Q  168 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  268 ctct 271  Q
    ||||    
T  48004067 ctct 48004070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 47994680 - 47994783
Alignment:
Q  168 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  268 ctct 271  Q
    ||||    
T  47994780 ctct 47994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 48013252 - 48013355
Alignment:
Q  168 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 267  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  268 ctct 271  Q
    ||||    
T  48013352 ctct 48013355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 36212913 - 36213036
Alignment:
Q  160 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 259  Q
    |||||||||||||| | ||||||||  | ||| |||||||||||||||  ||| |||||||||  ||||||||||| ||| | || ||||||||||||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttg 36213012  T
Q  260 atactactctctgtccctcttcat 283  Q
    |||||| |||||| ||||| ||||    
T  36213013 atactaatctctgcccctcctcat 36213036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  169 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 265  Q
    |||||||  ||||||| ||||||||  ||| ||||||||||||   ||||||||  |||||||||||||||||| |  ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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