View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_97 (Length: 267)

Name: NF8206A_low_97
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_97
NF8206A_low_97
[»] chr7 (2 HSPs)
chr7 (8-83)||(16263049-16263124)
chr7 (196-258)||(35347781-35347843)
[»] chr6 (1 HSPs)
chr6 (196-258)||(2274839-2274901)
[»] chr5 (1 HSPs)
chr5 (196-258)||(39346329-39346391)
[»] chr1 (2 HSPs)
chr1 (196-258)||(4012173-4012235)
chr1 (196-245)||(25875860-25875909)
[»] chr4 (3 HSPs)
chr4 (26-81)||(14015900-14015955)
chr4 (26-81)||(15563254-15563309)
chr4 (26-81)||(15575901-15575956)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 16263124 - 16263049
Alignment:
Q  8 gaacaatatcaaggtacacatgcaccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatgaca 83  Q
    ||||||| |||||||| |||||| ||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  16263124 gaacaatgtcaaggtaaacatgcccctgaaggtaaagcaattgcaagaaaattgaagctgcttgctgaacatgaca 16263049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 35347781 - 35347843
Alignment:
Q  196 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 258  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  35347781 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 35347843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 2274839 - 2274901
Alignment:
Q  196 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 258  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  2274839 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 2274901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 39346329 - 39346391
Alignment:
Q  196 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 258  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  39346329 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 39346391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 4012173 - 4012235
Alignment:
Q  196 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 258  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  4012173 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 4012235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 25875860 - 25875909
Alignment:
Q  196 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctatt 245  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  25875860 tctgcatgctactgtttcgtgtgcaggtgacttttcaaggtgaatctatt 25875909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 14015900 - 14015955
Alignment:
Q  26 catgcaccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 81  Q
    ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  14015900 catgcccctgaagataaagcaattgcaagagaattgaagctacttgctgaacatga 14015955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 15563254 - 15563309
Alignment:
Q  26 catgcaccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 81  Q
    ||||| ||| || ||||||||||| |||||||||||||||| ||| ||||||||||    
T  15563254 catgcccctgaagataaagcaatttcaagagaattgaagctactttctgaacatga 15563309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 15575901 - 15575956
Alignment:
Q  26 catgcaccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 81  Q
    ||||| ||| || ||||||||||| |||||||||||||||| ||| ||||||||||    
T  15575901 catgcccctgaagataaagcaatttcaagagaattgaagctactttctgaacatga 15575956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University