View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8206_low_3 (Length: 537)
Name: NF8206_low_3
Description: NF8206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 106 - 401
Target Start/End: Complemental strand, 24414321 - 24414033
Alignment:
| Q |
106 |
attattagttgatttgagataaatcagtcccgtcttttatcctattgtgaaggagcgtatttcttaaatcctattgaagttattggtgaataggcaagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24414321 |
attattagttgatttgagataaatcagtcccgtcttttatcctattgtgaaggaacatatttcttaaatcctattgaagttattggtgaataggcaagaa |
24414222 |
T |
|
| Q |
206 |
ctgatttccagacctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattattagttgcaaggaagttgattct |
305 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||| |||||||||| |
|
|
| T |
24414221 |
ccaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------ttttttgttgcaagggagttgattct |
24414129 |
T |
|
| Q |
306 |
acaacagcaactaaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
401 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24414128 |
acaacagcaattaaagcacgtctaatattgaagttgaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
24414033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 184 - 537
Target Start/End: Complemental strand, 19024446 - 19024101
Alignment:
| Q |
184 |
gttattggtgaataggcaagaactgatttccagacctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattat |
283 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
19024446 |
gttattggtgaataggaaagaataaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------tttt |
19024354 |
T |
|
| Q |
284 |
tagttgcaaggaagttgattctacaacagcaactaaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactg |
383 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
19024353 |
ttgttgcaagggagttgattctacaacaacaactaaagcatgtgtaatattgaagttcaa-caacggttgaggtaaagggcttcggaacgttgatatctg |
19024255 |
T |
|
| Q |
384 |
actcacggtggtgggagagagcttgaagtggtaacaaaatcatctctcctaagaatttcactttagattctctgtttgtgttctgttccatggtaaaaat |
483 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19024254 |
actcacggtggtgggagagaacttgaagtggtaacacaatcacctcccctaagaatttcactttagattctctgtttgtgttctgttccatggtaacaat |
19024155 |
T |
|
| Q |
484 |
aataactataggattttttgttaactatcgtcaaagaaactgacatattttttc |
537 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
19024154 |
aataactataggacttcttgttaactatcatcaaagaaactaacatattttttc |
19024101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 48011384 - 48011422
Alignment:
| Q |
71 |
atgaggcagagaatatgacatgggaatcaaagtacatta |
109 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
48011384 |
atgaggcagagcatgtgacatgggaatcaaagtacatta |
48011422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University