View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8207_high_1 (Length: 512)
Name: NF8207_high_1
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8207_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 6608011 - 6608337
Alignment:
| Q |
18 |
atatagatcatggaagcttctattaaaaagaagatgatcgacaaaagtgacaccaatatagagcaattaattaagaaagaaattgaaaaaggtgtttata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
6608011 |
atatagatcatggaagcttctattaaaaagaagatgatcgacaaaagtgacaccaatatagagcaattaattaggaaagaaattgaaaa-ggtgtttata |
6608109 |
T |
|
| Q |
118 |
ccctagcagtgcatttgtatcaagtataatgagtatttagttttttgttattgaatttaattctgccaattattgttttagacaaatgaaaatgagaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6608110 |
ccctagcagtgcatttgtatcaagtataatgagtatttagttttttgttatagaatttaattctgacaattattgttttagacaaatgaaaatgagaaat |
6608209 |
T |
|
| Q |
218 |
ctaataggaggaggattgagaag-----------gaagcgtcttgacttgtaccagaaggaaaaagaagatatcaaagagaaatgtccttatttctggac |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6608210 |
ctaataggaggaggattgagaaggagttcaaccagaagcgccttgacttgtaccagaaggaaaaagaagatatcaaagagaaatgtccttatttctggac |
6608309 |
T |
|
| Q |
307 |
aaatccaaacacacataacatatttata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6608310 |
aaatccaaacacacataacatatttata |
6608337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 367 - 484
Target Start/End: Original strand, 6608333 - 6608450
Alignment:
| Q |
367 |
ttatagtactaaactttttaaaatcaaagaaagagaaaatacaaatgcagatcatatatctagttaacaaccctacaatttttccttatttgaccctgtt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6608333 |
ttatagtactaaactttttaaaatcaaaggaagagaaaatacaaatgcagatcatatatctagttaacaaccctacaatttttccttatttgaccctgtt |
6608432 |
T |
|
| Q |
467 |
gtcccgtcagaacaccaa |
484 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
6608433 |
gtcccgtcaaaacaccaa |
6608450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 6600980 - 6601025
Alignment:
| Q |
427 |
tagttaacaaccctacaatttttccttatttgaccctgttgtcccg |
472 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6600980 |
tagttaacagccctacaatttttccttatttgaccctgctgtcccg |
6601025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 6600901 - 6600965
Alignment:
| Q |
328 |
atttatatcatcatttgaggcaggcacggtttcatacaattatagtactaaactttttaaaatca |
392 |
Q |
| |
|
||||||||||| |||||||||| || | ||||||||||| || | ||||||| |||||||||||| |
|
|
| T |
6600901 |
atttatatcattatttgaggcaagcccagtttcatacaaatacattactaaattttttaaaatca |
6600965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University