View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8207_high_2 (Length: 447)
Name: NF8207_high_2
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8207_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 8172624 - 8172853
Alignment:
| Q |
19 |
ttagtatggtcatggatcaatccttttttaggatgactatcaatgaagcatttaattgttttcagatgcttgagattaactttatttggaaattcatttt |
118 |
Q |
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| T |
8172624 |
ttagtatggtcatggatcaaaccttttttagaatgactatcaatgaagcatttaatcgttttgagaagtttgagattgactttatttggaaattcatttt |
8172723 |
T |
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| Q |
119 |
aaattttctcttgatttggtgtaatcacgctttcatttaaatagttgagttttttaactttttgatcttatgatacacttagccagctaagtgatcgata |
218 |
Q |
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| T |
8172724 |
aaattttctcttgatttggtgtaatcgcgctttcatttaaatagttgagttttgtaactttttgatcttatgatacacctagccagctaagtgatcgata |
8172823 |
T |
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| Q |
219 |
aattgcactcttcgagtgagtgtagactcc |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8172824 |
aattgcactcttcgagtgagtgtagactcc |
8172853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 8172895 - 8172982
Alignment:
| Q |
290 |
ttctcattaatatttagtataaaacagaatgacaattacactgtgatataaaggattggtagctcacaaccttctaaccaacaagtgt |
377 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172895 |
ttctcattaatatttattataaaacagaatgacaattacactgtgatataaaggattggtagctcacaaccttctaaccaacaagtgt |
8172982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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