View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8207_high_6 (Length: 253)
Name: NF8207_high_6
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8207_high_6 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 32957099 - 32957288
Alignment:
| Q |
41 |
cctcaactaaccttgctctaatcccaatattaatgctaaacatacacttctct---------ctcggtaatctaatgccttcattaattgccaaaacttt |
131 |
Q |
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| T |
32957099 |
cctcaattaaccttgctctaatcccaatattaatgctaaacatacacttctctacctgcattctcggtaatctaatgccttcattaattgccaaaacttt |
32957198 |
T |
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| Q |
132 |
catattcctaatccatgctagagacaataagagattgttcgtcgcacaccacatcctcactttcctttttaatgttaagtgttaacgtaa |
221 |
Q |
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| T |
32957199 |
catattcctaatccatgctagagacaataagagattgttcgtcgcacaccacatcctcagtttcctttttaatgttaagtgttaacgtaa |
32957288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 37861766 - 37861798
Alignment:
| Q |
221 |
agggtgtgtttgatttacaaaacagtaagtact |
253 |
Q |
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| T |
37861766 |
agggtgtgtttgatttgcaaaacagtaagtact |
37861798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 7726036 - 7726002
Alignment:
| Q |
219 |
taagggtgtgtttgatttacaaaacagtaagtact |
253 |
Q |
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| T |
7726036 |
taagggtgtgtttgatttgcaaaacagtaagtact |
7726002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 41790688 - 41790656
Alignment:
| Q |
221 |
agggtgtgtttgatttacaaaacagtaagtact |
253 |
Q |
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| T |
41790688 |
agggtgtgtttggtttacaaaacagtaagtact |
41790656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 42510402 - 42510436
Alignment:
| Q |
219 |
taagggtgtgtttgatttacaaaacagtaagtact |
253 |
Q |
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| T |
42510402 |
taagggtgtgtttgatttgcaaaacagtaagtact |
42510436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 30599229 - 30599197
Alignment:
| Q |
221 |
agggtgtgtttgatttacaaaacagtaagtact |
253 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
30599229 |
agggtgtgtttggtttacaaaacagtaagtact |
30599197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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