View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8207_high_8 (Length: 232)
Name: NF8207_high_8
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8207_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32595815 - 32596035
Alignment:
| Q |
1 |
ggtggatcagatcaagtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32595815 |
ggtggatcagatcaagtacacagttcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagc |
32595914 |
T |
|
| Q |
101 |
cttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaannnnnnnccttgccgcttctgcttgttgagctttttcttttacgattaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32595915 |
cttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaatttttttccttgccgcttctgcttgttgagctttttcttttacaattaag |
32596014 |
T |
|
| Q |
201 |
tcaaccactgacatccttctt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32596015 |
tcaaccactgacatccttctt |
32596035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 32600431 - 32600597
Alignment:
| Q |
26 |
cacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgca |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600431 |
cacaattattctactacattccctttacagttattgagttgttgaaagccactaattttccaacgcacgtttagccttctccagtgctgtcctggctgca |
32600530 |
T |
|
| Q |
126 |
acttgcgttgtgtctctctctacaannnnnnnccttgccgcttctgcttgttgagctttttctttta |
192 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
32600531 |
acttgctttgtgtctctctctacaaaaaatttccttgccgcttcggcttgtcgagttttatctttta |
32600597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 31784076 - 31784213
Alignment:
| Q |
12 |
tcaagtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtg |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| |||||| |||| |||||||||||||||||||| ||||||| | |
|
|
| T |
31784076 |
tcaagtacacaattcacgattattctactacaatcactacacaattattgagttgttgtaaggaactaattttccaatgcacgtttagcattctccaacg |
31784175 |
T |
|
| Q |
112 |
ctgtcctggctgcaacttgcgttgtgtctctctctaca |
149 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| |||| |
|
|
| T |
31784176 |
ctgtcttggctgcaatttgctttgtgtctctctgtaca |
31784213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 32802397 - 32802263
Alignment:
| Q |
15 |
agtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||||||||| ||| || |||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
32802397 |
agtacacaattcacaattattctacttcattcactacacaattattgagttgttgaaaggaactaattttccaatgcacgtttagcattctccaacgctg |
32802298 |
T |
|
| Q |
115 |
tcctggctgcaacttgcgttgtgtctctctctaca |
149 |
Q |
| |
|
|| |||||| || |||| ||||||||||||||||| |
|
|
| T |
32802297 |
tcttggctgaaatttgctttgtgtctctctctaca |
32802263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 37391803 - 37391704
Alignment:
| Q |
51 |
tacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaa |
150 |
Q |
| |
|
|||| |||||||||| |||||| | || |||||||||||||||| ||| ||||||| || ||||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
37391803 |
tacatttattgagttgttgtaaggaaataattttccaatgcacgttaagcattctccaatgttgtcctgactgcaatttgatttgtgtcgctctctacaa |
37391704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University