View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8207_low_4 (Length: 311)

Name: NF8207_low_4
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8207_low_4
NF8207_low_4
[»] chr2 (20 HSPs)
chr2 (1-293)||(39379551-39379843)
chr2 (21-207)||(39386437-39386626)
chr2 (32-169)||(39139771-39139908)
chr2 (72-207)||(39179534-39179673)
chr2 (246-293)||(39372207-39372254)
chr2 (65-167)||(39419997-39420100)
chr2 (78-210)||(39156683-39156817)
chr2 (116-210)||(39188437-39188534)
chr2 (21-130)||(39204564-39204674)
chr2 (246-289)||(44748569-44748612)
chr2 (246-284)||(44625145-44625183)
chr2 (26-161)||(39452040-39452177)
chr2 (65-172)||(39224535-39224643)
chr2 (246-293)||(39386346-39386393)
chr2 (117-210)||(39145025-39145119)
chr2 (246-292)||(39179717-39179763)
chr2 (123-169)||(39372054-39372100)
chr2 (252-293)||(39419844-39419885)
chr2 (249-281)||(2363551-2363583)
chr2 (27-169)||(39471627-39471770)
[»] chr5 (3 HSPs)
chr5 (21-172)||(33563134-33563292)
chr5 (255-289)||(17061239-17061273)
chr5 (246-292)||(33563384-33563430)
[»] chr7 (1 HSPs)
chr7 (26-134)||(19810024-19810134)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 39379843 - 39379551
Alignment:
Q  1 taagaaaataggacaactcttgatatgtaattggcttaattttgtttcccccacagttctcacctttgtttagagagaattgacgtcttggtgttaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379843 taagaaaataggacaactcttgatatgtaattggcttaattttgtttcccccacagttctcacctttgtttagagagaattgacgtcttggtgttaatct 39379744  T
Q  101 tggaatatgaaataaacttcatatttatctctctatttatgtatcttttctattttctaaatggtttgacaatttttgaatgttctgtccaatctgctta 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39379743 tggaatatgagataaacttcatatttatctctctatttatgtatcttttctattttctaaatggtttgacaatttttgaatgttctgtccgatctgctta 39379644  T
Q  201 gatttttgttgttgttaattggtagatatttttggcctgttctggtcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaat 293  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379643 gatttttgttgttgttaattggtagatattttcggcctgttctggtcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaat 39379551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 39386626 - 39386437
Alignment:
Q  21 tgatatgtaattggcttaattttgtttcccccacagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaactt 119  Q
    |||| |||||||||||| ||||||||||||| |||| |||| | |||||| | ||| |||  || ||||| | | ||| ||| ||| ||||| || ||||    
T  39386626 tgatttgtaattggcttgattttgtttccccaacagatctcgcgtttgttaatagataatcaacatcttgctttcaatgctttgaaaatgaattagactt 39386527  T
Q  120 c-atatttatctctctatttatgtatcttttctattttctaaatggtttgacaatttttg-aatgttctgtccaatctgcttagattttt 207  Q
    | | |||||||||||  ||||||||||| ||||| ||||||||||||||||||| ||||| ||| ||| || |||||||||||| |||||    
T  39386526 cgaaatttatctctccttttatgtatctcttctagtttctaaatggtttgacaaattttgaaatattcagttcaatctgcttagtttttt 39386437  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 39139771 - 39139908
Alignment:
Q  32 tggcttaattttgtttccccca-cagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcatatttatc 129  Q
    |||||| ||||||||||||||| |||||||  | |||||| ||||| ||||||| ||||||||||||| | ||||| |||||||| |||||| ||| |||    
T  39139771 tggcttcattttgtttcccccaacagttctatcatttgttaagagaaaattgacatcttggtgttaatgcgtggaaaatgaaatagacttcaaattcatc 39139870  T
Q  130 tctctatttatgtatcttttctattttctaaatggtttga 169  Q
    ||||  || |||||||| ||| || || ||||||||||||    
T  39139871 tctc--ttcatgtatctcttccatgttataaatggtttga 39139908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 39179534 - 39179673
Alignment:
Q  72 agagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcatatttatctctctattt--atgtatcttttctattttctaaatggtttg 168  Q
    ||||| ||||||| ||||||| ||||| ||| ||| ||||| || |||| | |||||||||||| |||  |||||||| |||||||||||||||||||||    
T  39179534 agagaaaattgacatcttggttttaatgctttgaaaatgaattagacttgaaatttatctctctctttttatgtatctcttctattttctaaatggtttg 39179633  T
Q  169 acaatttttg-aatgttctgtccaatctgcttagattttt 207  Q
    | || || || ||||||| || |||||||||||| |||||    
T  39179634 ataaattgtgaaatgttcagttcaatctgcttagtttttt 39179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 39372207 - 39372254
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaat 293  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  39372207 tcttgcaccttgcagattttgttgagaatcttattaggaggaagcaat 39372254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 39420100 - 39419997
Alignment:
Q  65 tttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcatatttatctctctatttatgtatcttttctattttctaaatg 163  Q
    |||||| ||||| ||||||| |||| |||||||| |||| || |||||||| |||| | |||||||||||| |||| | |||| ||| ||||||||||||    
T  39420100 tttgttaagagaaaattgacatctttgtgttaatgcttgtaaaatgaaatatacttgaaatttatctctctttttacgcatctcttccattttctaaatg 39420001  T
Q  164 gttt 167  Q
    ||||    
T  39420000 gttt 39419997  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 39156683 - 39156817
Alignment:
Q  78 aattgacgtcttggtgttaat-cttggaatatgaaataaacttcatatttatctctctattt-atgtatcttttctattttctaaatggtttgacaattt 175  Q
    |||||||  |||||||||||| ||||||| |||||||| | || | | | |||||||| ||| |||| ||| ||| |||||||||||||| |||| |  |    
T  39156683 aattgacaacttggtgttaatgcttggaaaatgaaatagaattgaaactgatctctcttttttatgtgtctcttccattttctaaatggtatgacgaagt 39156782  T
Q  176 ttgaatgttctgtccaatctgcttagatttttgtt 210  Q
    |||||| ||| |||||||| |||||||||||||||    
T  39156783 ttgaatattcagtccaatcagcttagatttttgtt 39156817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 39188534 - 39188437
Alignment:
Q  116 acttcatatttatctctctatttat--gtatcttttctattttctaaatggtttgacaatttttgaa-tgttctgtccaatctgcttagatttttgtt 210  Q
    |||||| |||||||||||| |||||  |||| | |||||||||  |||||||||||||| ||||||| | ||| |||||||||||| |||||||||||    
T  39188534 acttcaaatttatctctctttttatatgtatttcttctatttttcaaatggtttgacaacttttgaactattcagtccaatctgctaagatttttgtt 39188437  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 39204674 - 39204564
Alignment:
Q  21 tgatatgtaattggcttaattttgtttcccccacagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaactt 119  Q
    ||||||||||||||||| ||||||||||||| |||| |||||| ||||||  |||| ||||||| |||| || ||||| ||| ||  |||||||| ||||    
T  39204674 tgatatgtaattggcttcattttgtttccccaacagatctcacatttgttacgagaaaattgacatcttcgttttaatgctttgagaatgaaatagactt 39204575  T
Q  120 catatttatct 130  Q
     | ||||||||    
T  39204574 gaaatttatct 39204564  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 44748569 - 44748612
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaagaggaag 289  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  44748569 tcttacaccttgcagattttgttgagaatcttatcaagatgaag 44748612  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 44625145 - 44625183
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaaga 284  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44625145 tcttacaccttgcagattttgttgagaatcttatcaaga 44625183  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 39452040 - 39452177
Alignment:
Q  26 tgtaattggcttaattttgtttccccc-acagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcata 123  Q
    ||||||| | || |||||||||||||| || ||| || | |||||| || || ||||||| |||| |||||||| ||||||| |||||||  |||| | |    
T  39452040 tgtaattcgattcattttgtttcccccaactgttgtctcatttgttaagggaaaattgacatcttagtgttaatgcttggaaaatgaaattgacttgaaa 39452139  T
Q  124 tttatctctctatttatgtatcttttctattttctaaa 161  Q
    | ||||||||| |||||| |||| ||| ||||||||||    
T  39452140 tgtatctctctttttatgcatctcttccattttctaaa 39452177  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 39224535 - 39224643
Alignment:
Q  65 tttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcatatttatctctctatttatgtatcttttctattttctaaatg 163  Q
    |||||| ||||| |||||||  |||||| ||||| ||| ||| |||||| | | || | |||||||||||| ||  ||||||| | ||||||||||||||    
T  39224535 tttgttaagagaaaattgacagcttggttttaatgctttgaaaatgaaacagaattgaaatttatctctcttttcttgtatctatactattttctaaatg 39224634  T
Q  164 gtttgacaa 172  Q
    |||||||||    
T  39224635 gtttgacaa 39224643  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 39386393 - 39386346
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaat 293  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||||||    
T  39386393 tcttgcatcttccagattttgttaagcatcttatcaagaggaagcaat 39386346  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 39145025 - 39145119
Alignment:
Q  117 cttcatatttatctctctatttatgtatcttttctattttctaaatggtttgacaatttttgaa-tgttctgtccaatctgcttagatttttgtt 210  Q
    ||||| || ||||||| | | ||||||| | |||||||||  |||||||||||||| ||||||| | ||| |||||||||||| || ||||||||    
T  39145025 cttcaaatatatctctttttatatgtatttcttctatttttcaaatggtttgacaacttttgaactattcagtccaatctgctaagctttttgtt 39145119  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 39179717 - 39179763
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaa 292  Q
    ||||||| ||||||||||||||| || |||||||||| |||||||||    
T  39179717 tcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaa 39179763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 39372054 - 39372100
Alignment:
Q  123 atttatctctctatttatgtatcttttctattttctaaatggtttga 169  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||||||    
T  39372054 atttatctctccttttatgtatctcttctattttataaatggtttga 39372100  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 39419885 - 39419844
Alignment:
Q  252 accttgcagattttgttgagaatcttatcaagaggaagcaat 293  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  39419885 acctcgcagattttgttgagaatcttataaggaggaagcaat 39419844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 2363551 - 2363583
Alignment:
Q  249 tgcaccttgcagattttgttgagaatcttatca 281  Q
    |||||||||||||||||||| ||||||||||||    
T  2363551 tgcaccttgcagattttgttcagaatcttatca 2363583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 39471770 - 39471627
Alignment:
Q  27 gtaattggcttaattttgtttccccca-cagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcatat 124  Q
    ||||||||||| ||||||| ||| | | |||||||  | |||||| ||||| ||||||| |||||||||||||  |||||| |||||||| || | |  |    
T  39471770 gtaattggctttattttgtgtccgctaacagttctatcatttgttaagagaaaattgacatcttggtgttaatgattggaaaatgaaatagacatgaatt 39471671  T
Q  125 ttatctctctatttatgtatcttttctattttctaaatggtttga 169  Q
    ||| |||||| |||||||||||  |  |||||| |||||||||||    
T  39471670 ttacctctct-tttatgtatctcatgcattttcgaaatggtttga 39471627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 33563134 - 33563292
Alignment:
Q  21 tgatatgtaattggcttaattttgtttcccccacagttctcacctttgtttagagagaattgacgtcttggtgttaatcttg-------gaatatgaaat 113  Q
    ||||||||||||||||| |||||||||| || |||| |||||| |||||| ||||| ||||||| ||||| | |||| |||        ||| |||||||    
T  33563134 tgatatgtaattggcttcattttgtttcaccaacagatctcacatttgttaagagaaaattgacatcttgattttaaacttaatgctttgaaaatgaaat 33563233  T
Q  114 aaacttcatatttatctctctatttatgtatcttttctattttctaaatggtttgacaa 172  Q
    | |||| | |||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  33563234 agacttgaaatttatctctcattttatgtatctcttctattttctaaatggtttgacaa 33563292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 17061239 - 17061273
Alignment:
Q  255 ttgcagattttgttgagaatcttatcaagaggaag 289  Q
    |||||||||||||||||||||||||||||||||||    
T  17061239 ttgcagattttgttgagaatcttatcaagaggaag 17061273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33563384 - 33563430
Alignment:
Q  246 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaa 292  Q
    ||||||| ||||||||||||||| || |||||||||| |||||||||    
T  33563384 tcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaa 33563430  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 19810024 - 19810134
Alignment:
Q  26 tgtaattggcttaattttgtttccccca-cagttctcacctttgtttagagagaattgacgtcttggtgttaat-cttggaatatgaaataaacttcata 123  Q
    |||| ||||||| ||||||||||||| | |||||||  | |||||| ||||| ||||||| || | |||||||| ||||||| || ||||| |||||| |    
T  19810024 tgtagttggcttcattttgtttcccctaacagttctatcatttgttaagagaaaattgacatcatagtgttaatgcttggaaaatcaaatagacttcaaa 19810123  T
Q  124 tttatctctct 134  Q
    |||||||||||    
T  19810124 tttatctctct 19810134  T

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