View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8207_low_7 (Length: 257)
Name: NF8207_low_7
Description: NF8207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8207_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 2919134 - 2919345
Alignment:
| Q |
38 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaatta |
137 |
Q |
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| T |
2919134 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaagcacaaggttcaatcctagcttatactaagcattacccttaatcaaatt- |
2919232 |
T |
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| Q |
138 |
gggaattagggaaggaagattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtccta |
237 |
Q |
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| T |
2919233 |
-------agggaaggaaaattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtccta |
2919325 |
T |
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| Q |
238 |
attgggagttagtgaagtcc |
257 |
Q |
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|||||||||||||||||||| |
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| T |
2919326 |
attgggagttagtgaagtcc |
2919345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 2933924 - 2934135
Alignment:
| Q |
38 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaatta |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
2933924 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaagcattacccttaatcatatta |
2934023 |
T |
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| Q |
138 |
gggaattagggaaggaagattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtccta |
237 |
Q |
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| T |
2934024 |
ggga---aggacagg-----tgaaaatatgggatcagaacacactcaaaagcttccactaattgacttcaataacctcaactttgaagccaaaaatccca |
2934115 |
T |
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| Q |
238 |
attgggagttagtgaagtcc |
257 |
Q |
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|||||||||||||||||||| |
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| T |
2934116 |
attgggagttagtgaagtcc |
2934135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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