View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_high_17 (Length: 341)
Name: NF8208A_high_17
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_high_17 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0649 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 311 - 621
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
311 |
aatgatgctggaataacatgcagcatattgctcttttttgaaaattgatggcacatactcagctatcctataatttttgtatttcatgcaagaaatggca |
410 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
411 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacaacatacttgtctccagtgtttgacatatgtataa |
510 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaatattataaaaatggttacattctgcaatttaacatatcaccagaatcattaaaaatcagctttct |
303 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
511 |
cttggaaatcatgatctctactttgcctacattaagattataaaaatggttacattctgcaatttaa-atatcaccagaatcattaaaaatcaagattct |
609 |
T |
|
| Q |
304 |
ttgtcatgatgt |
315 |
Q |
| |
|
||||||| |||| |
|
|
| T |
610 |
ttgtcattatgt |
621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 43017892 - 43017617
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
43017892 |
aatgatgctggaataacatgcagcatattgctcttttttgaaaattgatggcacatagtcagctatcctgtaatttttgtatttcatgcaagaaatgaca |
43017793 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
43017792 |
tgacagcatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgatagcgtacttgtctccagtgcttgacatatgtataa |
43017693 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaatattataaaaatggttacattctgcaatttaacatatcacca |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
43017692 |
cttggaaatcatgatctccactttgcctacattaagattaacaagatggttacattctgcaatttaa-atatcacca |
43017617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 15810628 - 15810919
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
15810628 |
aatgatgctggaataacatgcagcatattgctctttttttaaaattgatggcacatagtcagctatcctataatttttgtgtttcatgcaagaaatggca |
15810727 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
15810728 |
tgacaaaatggtagtcctgtcaacaaccatttcctacaatcacacactttgtccaacaagttgacatcatacttgtctccagtgcttgacatatatataa |
15810827 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaatattataaaaatggttacattctgcaatttaacatatcaccagaatcattaaaaatca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15810828 |
cttggaaatcatgatctccactttgcctacattaagattaacaagatggttacattatgcaatttaa-atatcaccagatgaattaaaaatca |
15810919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 27655826 - 27655592
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||| ||||||| |||||| | |||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||| || |||||||| | ||||||| |
|
|
| T |
27655826 |
aatgttgctggagtaacattctgcatattgctctttcttgaatattgatggcacataatcagctatcttgtaatttttatacttcatgcaagcaatggca |
27655727 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
27655726 |
tgacagcatggcagtcctgtcaacaaccatttcctgcaatcacaaattttgttcaacaagtttacagcaaacttgtctccagtctgtgacatatgtgtaa |
27655627 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaa |
238 |
Q |
| |
|
| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
27655626 |
cctggaaatcatcatctccaccttgcctacattaa |
27655592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 21543022 - 21543256
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||| |||||||| | ||||||| |
|
|
| T |
21543022 |
aatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcaactatattgtaatttttgtacttcatgcaagcaatggca |
21543121 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| || ||| || |||||| ||||||||| ||| | |||||||||| ||| |
|
|
| T |
21543122 |
tgacatcatggcagtcctgtcaacaaccattttctgcaatcacaaactttgttcatcaaatttacagcaaacttgtctctagtatgtgacatatgtgtaa |
21543221 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaa |
238 |
Q |
| |
|
| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
21543222 |
cctgaaaatcattatctccaccttgcctacattaa |
21543256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 25561339 - 25561400
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
25561339 |
ttcatgcaggaaatggcatgacaacatggtaaacctgtcaacaaccatctcctacaatcaca |
25561400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 7563756 - 7563990
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||| | |||| || |
|
|
| T |
7563756 |
aatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcagctatgttgtaatttttgtacttcatgcaagcaatgtca |
7563855 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataa |
203 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
7563856 |
tgacatcatgtcagtcctgtcaacaaccatttcctgcaatcacacactttgttcatcaagtttacagcaaacttgtctccagtctgtgacatatgtgtaa |
7563955 |
T |
|
| Q |
204 |
cttggaaatcatgatctccactttgcctacattaa |
238 |
Q |
| |
|
| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
7563956 |
cctgaaaatcattatctccaccttgcctacattaa |
7563990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 43581427 - 43581251
Alignment:
| Q |
56 |
acatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca-ctttg |
154 |
Q |
| |
|
||||||||||| || |||||| ||||| ||||||||| | ||||| |||||||||||| ||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
43581427 |
acatagtcagcaatgttgtaatatttgtgtttcatgcaagcaatgggatgacaacatggaagtcctgtcaaattccatttcctgcaatcacacaccattg |
43581328 |
T |
|
| Q |
155 |
tccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatgatctccactttgccta |
232 |
Q |
| |
|
| | |||||| ||||||||||||||||||| ||||| | ||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
43581327 |
t-ctgcaagttaacagcatacttgtctccagaatttgagagatggatcacttggaaatcatgatctccaccttgccta |
43581251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 24746299 - 24746480
Alignment:
| Q |
51 |
atggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacac-a |
149 |
Q |
| |
|
|||| ||||||||||| || |||||| ||||| ||||||||| | |||||||||||| |||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
24746299 |
atggtacatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacagcatgaaagtcctgtcaaattccatttcctgcaatcacacaa |
24746398 |
T |
|
| Q |
150 |
ctttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatgatctccactttgccta |
232 |
Q |
| |
|
| |||| | |||||| ||| ||||||||||||||| ||||| | ||| || |||||||| ||||||||||||| ||||||| |
|
|
| T |
24746399 |
cattgt-ctgcaagttaacaacatacttgtctccagaatttgagagatgaatcacttggaattcatgatctccaccttgccta |
24746480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 11386827 - 11386597
Alignment:
| Q |
8 |
atgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgac |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| || ||||||| |||||||| | ||||||||||| |
|
|
| T |
11386827 |
atgctggaataacatgcagcatactgctcttttttgaatattggtggaacatagtcagctatcctatagtttttgtgcttcatgcaagcaatggcatgac |
11386728 |
T |
|
| Q |
108 |
aacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttg |
207 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
11386727 |
aacatggaagtcctgtcaatagccatttcctgcaatcacatactttatccaacaagtttacagcatatttgtctccagtgtttgaaatatgtgtaacttg |
11386628 |
T |
|
| Q |
208 |
gaaatcatgatctccactttgcctacattaa |
238 |
Q |
| |
|
||||||| ||| || ||||||||||||| |
|
|
| T |
11386627 |
taaatcattatcatcagcttgcctacattaa |
11386597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 26450332 - 26450151
Alignment:
| Q |
51 |
atggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca- |
149 |
Q |
| |
|
|||| ||||||||||| || |||||| ||||| ||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26450332 |
atggtacatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacagcatggaagtcctgtcaaattccatttcctgcaatcacacag |
26450233 |
T |
|
| Q |
150 |
ctttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatgatctccactttgccta |
232 |
Q |
| |
|
| |||| | |||||| ||||||||||||||||||| ||||| | ||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
26450232 |
cattgt-ctgcaagttaacagcatacttgtctccagaatttgagagatgaatcacttggaaatcatgatctccaccttgccta |
26450151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 19836484 - 19836423
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19836484 |
ttcatgcaggaaatggcatgacaacatggtaagcctgtcaacaaccatttcctacaatcaca |
19836423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 21775857 - 21775897
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
21775857 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
21775897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 21792507 - 21792737
Alignment:
| Q |
8 |
atgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgac |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| || ||||||| |||||||| | ||||||||||| |
|
|
| T |
21792507 |
atgctggaataacatgcagcatactgctcttttttgaatattggtggaacatagtcagctatcctatagtttttgtgcttcatgcaagcaatggcatgac |
21792606 |
T |
|
| Q |
108 |
aacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttg |
207 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
21792607 |
aacatggaagtcctgtcaatagccatttcctgcaatcacatactttatccaacaagtttacagcatatttgtctccagtgtttgaaatatgtgtaacttg |
21792706 |
T |
|
| Q |
208 |
gaaatcatgatctccactttgcctacattaa |
238 |
Q |
| |
|
||||||| ||| || ||||||||||||| |
|
|
| T |
21792707 |
aaaatcattatcatcagcttgcctacattaa |
21792737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 32413884 - 32414057
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctcttttttgaagcttgatggcacatagtcagctatcctgtaatttttgtatttcatgcaggaaatggca |
103 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||| | |||| || |
|
|
| T |
32413884 |
aatgatgctggagtaacattctgcatattgctctttcttgaatattgatggcacatagtcagctatgttgtaatttttgtacttcatgcaagcaatgtca |
32413983 |
T |
|
| Q |
104 |
tgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacactttgtccaacaagttgacagcatactt |
177 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||| |
|
|
| T |
32413984 |
tgacagcatgacagtcctgtcaacaaccatttcctgcaatcacaaactttgttcatcaagtttacagcaaactt |
32414057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 21008186 - 21008362
Alignment:
| Q |
56 |
acatagtcagctatcctgtaatttttgtatttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacaca-ctttg |
154 |
Q |
| |
|
||||||||||| || |||||| ||||| ||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
21008186 |
acatagtcagcaatgttgtaatgtttgtgtttcatgcaagcaatggcatgacaacatggaagtcctgtcaaattccatttcctgcaatcacacaccattg |
21008285 |
T |
|
| Q |
155 |
tccaacaagttgacagcatacttgtctccagtgtttgacatatgtataacttggaaatcatgatctccactttgccta |
232 |
Q |
| |
|
| | |||||| ||| ||||||||||||||| ||||| | ||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
21008286 |
t-ctgcaagttaacaacatacttgtctccagaatttgagagatggatcacttggaaatcatgatctccaccttgccta |
21008362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 24506969 - 24506906
Alignment:
| Q |
87 |
tcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacacac |
150 |
Q |
| |
|
|||||||||||||||||||||| || || | |||||||| ||||||||||| || |||||||| |
|
|
| T |
24506969 |
tcatgcaggaaatggcatgacagcagggcaaccctgtcaataaccatttcctacagtcacacac |
24506906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 23332179 - 23332139
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
23332179 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
23332139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 37101500 - 37101561
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcaca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
37101500 |
ttcatgcaggaaatggcatgacaacatggtaaacctgtcaacaaccatctcctacaatcaca |
37101561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 8511832 - 8511798
Alignment:
| Q |
4 |
aatgatgctggaataacatgcagcatattgctctt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8511832 |
aatgatgctggaataacatgcagcatattgctctt |
8511798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 20623796 - 20623756
Alignment:
| Q |
86 |
ttcatgcaggaaatggcatgacaacatggtagtcctgtcaa |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
20623796 |
ttcatgcaggagatggcatgacaacatggcaatcctgtcaa |
20623756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 20067847 - 20067786
Alignment:
| Q |
87 |
tcatgcaggaaatggcatgacaacatggtagtcctgtcaacaaccatttcctgcaatcacac |
148 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||| | ||||||||| || |||||| |
|
|
| T |
20067847 |
tcatgcaggaaatggcatgacagcatggcaaacctgtcaaaagccatttcctacagtcacac |
20067786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University