View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_high_26 (Length: 308)

Name: NF8208A_high_26
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_high_26
NF8208A_high_26
[»] chr4 (5 HSPs)
chr4 (24-157)||(24685855-24685988)
chr4 (218-308)||(24686060-24686150)
chr4 (218-305)||(24127132-24127219)
chr4 (81-157)||(24126983-24127059)
chr4 (22-84)||(24126885-24126947)
[»] chr1 (2 HSPs)
chr1 (24-155)||(49383590-49383721)
chr1 (218-308)||(49383426-49383516)
[»] chr6 (3 HSPs)
chr6 (218-308)||(9306040-9306130)
chr6 (81-157)||(9306202-9306278)
chr6 (22-84)||(9306313-9306375)
[»] scaffold0471 (3 HSPs)
scaffold0471 (218-305)||(11736-11823)
scaffold0471 (81-157)||(11586-11663)
scaffold0471 (22-84)||(11488-11550)
[»] chr2 (3 HSPs)
chr2 (221-308)||(25649017-25649104)
chr2 (81-157)||(25649180-25649256)
chr2 (22-84)||(25649291-25649353)
[»] chr3 (1 HSPs)
chr3 (250-308)||(38442559-38442617)
[»] chr7 (1 HSPs)
chr7 (265-308)||(23455744-23455788)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 24685855 - 24685988
Alignment:
Q  24 gagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatt 123  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24685855 gagagagagaggagtttgaagttctaactcttctcgtttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatt 24685954  T
Q  124 tgtattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||||| |||||||    
T  24685955 tgtattgtttatgattgattcgatccgaaaatga 24685988  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 24686060 - 24686150
Alignment:
Q  218 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24686060 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 24686150  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 24127132 - 24127219
Alignment:
Q  218 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagag 305  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24127132 ctggaaaaatggagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagggagggagag 24127219  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 24126983 - 24127059
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24126983 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccaaaaatga 24127059  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 24126885 - 24126947
Alignment:
Q  22 aggagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24126885 aggagagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 24126947  T

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Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 49383721 - 49383590
Alignment:
Q  24 gagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatt 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49383721 gagagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcccaattctaacctaaatttgttgtttgatttgattccatt 49383622  T
Q  124 tgtattgtttatgattgattcgatccaaaaat 155  Q
    |||||||||||||||||||| ||||| |||||    
T  49383621 tgtattgtttatgattgatttgatccgaaaat 49383590  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 49383516 - 49383426
Alignment:
Q  218 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49383516 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggataggat 49383426  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 9306130 - 9306040
Alignment:
Q  218 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9306130 ctggaaaaatgtagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagggagggagaggat 9306040  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 9306278 - 9306202
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9306278 ttcccaattttaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccaaaaatga 9306202  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 9306375 - 9306313
Alignment:
Q  22 aggagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9306375 aggagagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 9306313  T

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Target: scaffold0471 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 11736 - 11823
Alignment:
Q  218 ctggaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagag 305  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11736 ctggaaaaatggagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagggagggagag 11823  T

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Target: scaffold0471; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 11586 - 11663
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattcca-tttgtattgtttatgattgattcgatccaaaaatga 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11586 ttcccaattctaacctaaatttgttgtttgatttgattccattttttattgtttatgattgattcgatccaaaaatga 11663  T

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Target: scaffold0471; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 11488 - 11550
Alignment:
Q  22 aggagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11488 aggagagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 11550  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 25649104 - 25649017
Alignment:
Q  221 gaaaaatgaagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25649104 gaaaaatggagaacaaagagagaaggacatgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagggagggagaggat 25649017  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 25649256 - 25649180
Alignment:
Q  81 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccaaaaatga 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  25649256 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccgaaaatga 25649180  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 25649353 - 25649291
Alignment:
Q  22 aggagagagagaggagtttgaagttctaactcttctattttcttcatcattctcttctcttcc 84  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25649353 aggagagagagaggagtttgaagttctaactcttctcttttcttcatcattctcttctcttcc 25649291  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 38442617 - 38442559
Alignment:
Q  250 tgaagatggtgatggtgatgaagaacaaagagaaaggagatggaagtgagggagaggat 308  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||||  || ||||||||    
T  38442617 tgaaggtggtgaaggtgatgaagaacaaagagaaaggaaatggaaggaagcgagaggat 38442559  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 23455788 - 23455744
Alignment:
Q  265 tgatgaagaacaaagagaaaggagatggaa-gtgagggagaggat 308  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  23455788 tgatgaagaacaaagagaaaggagatggaaggggagggagaggat 23455744  T

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