View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_high_3 (Length: 473)
Name: NF8208A_high_3
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 48484621 - 48484166
Alignment:
| Q |
8 |
caaagatatagtcctgtagtgttgtgtgtaccgtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
107 |
Q |
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| T |
48484621 |
caaagatatagtcctgcagtgttgtgtgtaccgtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
48484522 |
T |
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| Q |
108 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
207 |
Q |
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| T |
48484521 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
48484422 |
T |
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| Q |
208 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttctctttcaaatacatttttgaaatggagaaactt |
307 |
Q |
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| T |
48484421 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggagaaactt |
48484322 |
T |
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| Q |
308 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaa |
407 |
Q |
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| T |
48484321 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaa |
48484222 |
T |
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| Q |
408 |
gataacaagattattatatgtaacaggtgctataatcatcg-tcatgatgtccatc |
462 |
Q |
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| T |
48484221 |
gataacaagattattatatgtaacaggtgctataatcatcgttcatgatttccatc |
48484166 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 10036323 - 10036419
Alignment:
| Q |
339 |
tatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattatatgtaacaggt |
435 |
Q |
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||||| |||||| ||||||||||||| ||||| |||||||| ||||| |||||| | ||||| | || |||||||| ||||| || || ||||||| |
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| T |
10036323 |
tatgagccagttcatgcaaaatggacgacagaaagatgtgctatttgtagatggatcgaagactatgaggataacaaaattatcatctgcaacaggt |
10036419 |
T |
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