View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_high_30 (Length: 298)
Name: NF8208A_high_30
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 37122333 - 37122468
Alignment:
| Q |
8 |
ttggtgttcagtgttcttggtaactttcgagttggatgcttggtgacaagtgtgttaacttctgatgcaggaatcttcaacttaatttattaatgatagg |
107 |
Q |
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| T |
37122333 |
ttggtgttcagtgttcttggtaactttcgagttggatgcttggtgacaagtgtgttaacttctgatgcaggaatcttcaacttaatttattaatgatagg |
37122432 |
T |
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| Q |
108 |
ttgttgacagattgaaaagtcattttgaatagaaaa |
143 |
Q |
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| T |
37122433 |
ttgttgacagattgaaaagtcattttgaatagaaaa |
37122468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 37122486 - 37122617
Alignment:
| Q |
167 |
tgaggaatcaaagaaagacactggatatttctctgccaagggaaatattcccattcttactaaaaagaatttattcaagtatattcaacaaaacatgtct |
266 |
Q |
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| T |
37122486 |
tgaggaatcaaagaaagacactggatatttctctgccaagggaaatattcccattcttactaaaaacaatttattcaagtatattcaacaaaacatgtct |
37122585 |
T |
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| Q |
267 |
gcgtaagacacatacccttcctctattttcta |
298 |
Q |
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| T |
37122586 |
gcgtaagacacatacccttcctctattttcta |
37122617 |
T |
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