View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_high_31 (Length: 288)
Name: NF8208A_high_31
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_high_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 39496128 - 39495850
Alignment:
| Q |
10 |
aagaatatgggaaatgtttgtctaggaattctgaacggccctgaagtaggattgggtgaactgaacctaattggaggtgagaatttagctacattgtcgt |
109 |
Q |
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| T |
39496128 |
aagaatatgggaaatgtttgtctaggaattctgaacggccctgaagtaggattgggtgaactgaacctaattggaggtgagaatttagctacattgtcgt |
39496029 |
T |
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| Q |
110 |
attttggataataatctatgaagcatcgaaacaaatacaaacacgacatgaaagtaatgaatatattcacttgtgtcagtcttgtgccagacatgtctcg |
209 |
Q |
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| T |
39496028 |
attttggataataatctatgaagcatcgaaacaaatacaaacacgacatgaaagtaatgaatatattcacttgtgtcagtcttgtgccagacatgtcttg |
39495929 |
T |
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| Q |
210 |
cacaccagacacaccttcagtttgaagtgtcggtgctacatagatagtcatggatatcatcattacattgttcagcagt |
288 |
Q |
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| T |
39495928 |
cacaccagacacaccttcagtttgaagtgtcggtgctacatagatagtcatggatatcatcattacattgttcagcagt |
39495850 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 19424179 - 19424145
Alignment:
| Q |
215 |
cagacacaccttcagtttgaagtgtcggtgctaca |
249 |
Q |
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| T |
19424179 |
cagacacaccttcattttgaagtgtcggtgctaca |
19424145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 41047958 - 41047995
Alignment:
| Q |
215 |
cagacacaccttcagtttgaagtgtcggtgctacatag |
252 |
Q |
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| T |
41047958 |
cagacacaccttcaatgtgaagtgtcggtgctacatag |
41047995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 22882585 - 22882548
Alignment:
| Q |
218 |
acacaccttcagtttgaagtgtcggtgctacatagata |
255 |
Q |
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| T |
22882585 |
acacaccttcaatttgaagtgtcggtgccacatagata |
22882548 |
T |
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