View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_high_52 (Length: 203)
Name: NF8208A_high_52
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_high_52 |
 | |
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| [»] scaffold0649 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 82 - 263
Alignment:
| Q |
22 |
tgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
82 |
tgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtg |
181 |
T |
|
| Q |
122 |
agttatctctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182 |
agttatctctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 8512082 - 8511884
Alignment:
| Q |
6 |
ctgagatgaagttgcatgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaa |
105 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8512082 |
ctgagatgaaggtggctgagatgatggtggtggaggtagtgggcatgttgacttcttgtgtccaacttgcttgcacctactacacttaatcccataagaa |
8511983 |
T |
|
| Q |
106 |
gctctcttcatttgtgagttatctctcatcagctcacttgcatccattctcctcttct-ttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8511982 |
gctctcttcatttgtgagttatctctcatcagctcacttgcatccattcttctcttcttttttaggtctccctggttgccttttcactggaggtggttg |
8511884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 43018125 - 43017944
Alignment:
| Q |
22 |
tgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
43018125 |
tgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccagtttgcttgcacctactacacttaatcccataagaagctttcttcatttgtg |
43018026 |
T |
|
| Q |
122 |
agttatctctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43018025 |
agttatctctcatcagctcacttgcatccattctccttttctttttaggtctccctggttgccttttcacaggtggtggttg |
43017944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 15810405 - 15810586
Alignment:
| Q |
22 |
tgagatgatggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtg |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||| |
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|
| T |
15810405 |
tgagatgatggtggtggaggtggtgggcacgttgacttgttgtgtccagtttgcttgcacctactacatttaatctcataagaagctcacttcatttgta |
15810504 |
T |
|
| Q |
122 |
agttatctctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
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|
| T |
15810505 |
agttatctctcatcagctcacttgtatccattctcctcttctttttaggtctccctggttggcttttcacaagtggtggttg |
15810586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 38800251 - 38800081
Alignment:
| Q |
33 |
tggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctc |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||| | |||||||||||||| |||||| |||||| |
|
|
| T |
38800251 |
tggtgtaggtagtgggcatgttgacttgttgtgtccagtttgcttgcaactgctacacttaattccatatgtagctctcttcatttctgagttgtctctc |
38800152 |
T |
|
| Q |
133 |
atcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
38800151 |
atcagctcacttgcatccaatctcctcttctttttaggtctaccaggttgccttttcacaggtggtggttg |
38800081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 21542797 - 21542970
Alignment:
| Q |
30 |
tggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatct |
129 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||| ||| | |||| |
|
|
| T |
21542797 |
tggtggtggaggtagtgtgcatgttgatttgttgtgtccagtttgcttgcacctgctacacttaattccataactggctctcttcatctgtttttcatct |
21542896 |
T |
|
| Q |
130 |
ctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
21542897 |
cccatcagctcacttgcatccaatcttctcttctttttaggtctacctggttgccttttcacaggtggtggttg |
21542970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 27656050 - 27655878
Alignment:
| Q |
31 |
ggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctc |
130 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||| || ||||| |
|
|
| T |
27656050 |
ggtggtggaggtagtgtgcatgttgatttgttgtgtccagtttgcttgcacctactacacttaattccataactggctctcttcatctgtttgtcatctc |
27655951 |
T |
|
| Q |
131 |
tcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||||||| |||| ||||||||||| ||| |||||||| |
|
|
| T |
27655950 |
tcatcagctcacttgcatccaatcttctcttcgttttaggtctacctgattgccttttcataggtggtggttg |
27655878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 11387053 - 11386883
Alignment:
| Q |
33 |
tggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctc |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||| | |||||||||||||| |||||| | |||| |
|
|
| T |
11387053 |
tggtgtaggtagtgggcatgttgacttgttgtgtccagtttgcttgcaactactacacttacttccatatgtagctctcttcatttctgagttgtttctc |
11386954 |
T |
|
| Q |
133 |
atcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||| |||||||| |
|
|
| T |
11386953 |
atcagctcacttgcatccaatctcctcttctttttaggtctaccaggttgccttttcataggtggtggttg |
11386883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 26450591 - 26450452
Alignment:
| Q |
43 |
agtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctcatcagctcac |
142 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||| ||||| || ||||| || |||||||||| |||| | ||||| | ||||||| |
|
|
| T |
26450591 |
agtgggcatgttgacttattgtgtctagattgcttgcacctactgcactttattccatatgatgctctcttcaattgtccttcttctctgagaagctcac |
26450492 |
T |
|
| Q |
143 |
ttgcatccattctcctcttctttttaggtctccctggttg |
182 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
26450491 |
ttgcatccaatctccttttctttttaggtcttccaggttg |
26450452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 29749126 - 29749024
Alignment:
| Q |
31 |
ggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctc |
130 |
Q |
| |
|
||||||||||| || ||||||||| || ||||| |||||| ||| || |||||||||||||| ||||| ||||||||||||||||| | ||||| |
|
|
| T |
29749126 |
ggtggtggaggcagcttgcatgttgatttattgtggccaactgacttacatctactacacttaattccataccttgctctcttcatttgtgaatcatctc |
29749027 |
T |
|
| Q |
131 |
tca |
133 |
Q |
| |
|
||| |
|
|
| T |
29749026 |
tca |
29749024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 21792281 - 21792451
Alignment:
| Q |
33 |
tggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctc |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||| | |||||||||||||| |||||| | |||| |
|
|
| T |
21792281 |
tggtgtaggtagtgggcatgttgacttgttgtgtccagtttgcttgcaactactacacttacttccatatgtagctctcttcatttctgagttgtttctc |
21792380 |
T |
|
| Q |
133 |
atcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||| |||||||| |
|
|
| T |
21792381 |
atcagctcacttgcatccaatctcctcttctttttaggtctaccaggttgccttttcataggcggtggttg |
21792451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 32413659 - 32413832
Alignment:
| Q |
30 |
tggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatct |
129 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| || |||||||||||| ||||||||||| |||||| ||||||||||| ||| || |||| |
|
|
| T |
32413659 |
tggtggtggaggtagtgtgcatgttgatttgttgtgttcagtttgcttgcacctgctacacttaattccataactggctctcttcatctgtttgtcatct |
32413758 |
T |
|
| Q |
130 |
ctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
32413759 |
ctcatcagctcacttgcatccaatcttctcttctttttaggtctacctggttgccttttcacaggtggtggttg |
32413832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 21007914 - 21008061
Alignment:
| Q |
35 |
gtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctcat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||| || ||||||||||||||| | ||| | | |
|
|
| T |
21007914 |
gtggaggcagtgggcatgttgacttgttgtgtccagattgcttgcacctactgcactttattccatatgatgctctcttcatttgtccttcttctttgag |
21008013 |
T |
|
| Q |
135 |
cagctcacttgcatccattctcctcttctttttaggtctccctggttg |
182 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
21008014 |
aagctcacttgcatccaatctccttttctttttaggtcttccaggttg |
21008061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 7e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 7563531 - 7563704
Alignment:
| Q |
30 |
tggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatct |
129 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||| ||| || |||| |
|
|
| T |
7563531 |
tggtggtggaggtagtgtgcatgtggatttgttgtgtccagtttgcttgcacctgctacacttaattccataactggctctcttcatctgtttgtcatct |
7563630 |
T |
|
| Q |
130 |
ctcatcagctcacttgcatccattctcctcttctttttaggtctccctggttgccttttcacaggaggtggttg |
203 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7563631 |
ctcatcagctcacttgcatccaatcttctcttctttttaggtctacctggttgccttttcacaggtggtggttg |
7563704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 43581699 - 43581562
Alignment:
| Q |
35 |
gtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctcat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||| || ||||||||||||||| | ||||| | |
|
|
| T |
43581699 |
gtggaggcagtgggcatgttgacttgttgtgtccagattgcttgcacctactgcactttattccatatgatgctctcttcatttgtccttcttctctgag |
43581600 |
T |
|
| Q |
135 |
cagctcacttgcatccattctcctcttctttttaggtc |
172 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
43581599 |
aagctcacttacatccaatctccttttctttttaggtc |
43581562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 24746040 - 24746179
Alignment:
| Q |
43 |
agtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctctcatcagctcac |
142 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| || || || ||||| || ||||||||||||||| | ||||| | ||||||| |
|
|
| T |
24746040 |
agtgggcatgttgacttgttgtgtccagattgcttgcacctactgcattttattccatatgatgctctcttcatttgtccttcttctctaagaagctcac |
24746139 |
T |
|
| Q |
143 |
ttgcatccattctcctcttctttttaggtctccctggttg |
182 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
24746140 |
ttgcatccaatctccttttctttttaggtcttccaggttg |
24746179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 27693561 - 27693459
Alignment:
| Q |
31 |
ggtggtggaggtagtgggcatgttgacttgttgtgtccaacttgcttgcacctactacacttaatcccataagaagctctcttcatttgtgagttatctc |
130 |
Q |
| |
|
||||||||||| || ||||||||| || ||||| |||||| ||| || |||||||||||||| ||||| ||||||||||||||||| | ||||| |
|
|
| T |
27693561 |
ggtggtggaggcagcttgcatgttgatttattgtggccaactgacttacatctactacacttaattccataccttgctctcttcatttgtgaatcatctc |
27693462 |
T |
|
| Q |
131 |
tca |
133 |
Q |
| |
|
||| |
|
|
| T |
27693461 |
tca |
27693459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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