View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_1 (Length: 646)
Name: NF8208A_low_1
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Original strand, 40635126 - 40635773
Alignment:
| Q |
1 |
gaaagtacttaactttgatattttggactatgttgatattaataattaggaggacatacacgttttgtcctcttcttcctaacttcttcatattccaaag |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635126 |
gaaagtactttactttgat-ttttggactatgttgatattaataattaggaggacatacacgttttgtcctcttcttcctaacttcttcatattccaaag |
40635224 |
T |
|
| Q |
101 |
tatttccttatggtttattatcatacaaaaaagtgtgtgcaaataaaattcaaaaaggagggttggaagcatgaagagtagttccttaatcatttggaaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635225 |
tatttccttatggtt-attatcatacaaaaaagtgtgtgcaaataaaattcaaaaaggagggttggaagcatgaagagtagttccttaatcatttggaaa |
40635323 |
T |
|
| Q |
201 |
accaaaaccaaaagataaacaaattaattaagcagag--------------ttcacatggctgctggcgttgcagtcgatgttgtggtatcagtggttgc |
286 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635324 |
acgaaaaccaaaagataaacaaattaattaagcagagctagcagagaagacttcacatggctgctggcgttgcagtcgatgttgtggtatcagtggttgc |
40635423 |
T |
|
| Q |
287 |
aaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagagtggattgagaaagagctgaggtcaatgcggggattgttagaacag |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635424 |
aaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagaatggattgagaaagagctgaggtcaatgcggggattgttagaacag |
40635523 |
T |
|
| Q |
387 |
gttgagcagcgcggggatggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635524 |
gttgagcagcgcggggatggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgt |
40635623 |
T |
|
| Q |
487 |
tcgtcataaaatcagtcaagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgag |
586 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635624 |
tcgtcatcaaatcagtcaagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgag |
40635723 |
T |
|
| Q |
587 |
agacatctctcagaaaataatgaatttaaacttggatgttagtgtctctg |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635724 |
agacatctctcagaaaataatgaatttaaacttggatgttagtgtctctg |
40635773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 270 - 634
Target Start/End: Complemental strand, 40629728 - 40629364
Alignment:
| Q |
270 |
gtggtatcagtggttgcaaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagagtggattgagaaagagctgaggtcaatgc |
369 |
Q |
| |
|
|||||||||| |||||| ||| ||||| ||||||||||||| || ||||||| | ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40629728 |
gtggtatcaggggttgctaaaatcctgattgaagagtatgcggtgttgggggatgcagcgagacacgtagaatggattgagaaagagctgaggtcaatga |
40629629 |
T |
|
| Q |
370 |
ggggattgttagaacaggttgagcagcgcggggatggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaa |
469 |
Q |
| |
|
|||||||||||| ||| |||| || |||||||| || ||||||||||||| |||| ||||||||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
40629628 |
tgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgctttggatgcaaa |
40629529 |
T |
|
| Q |
470 |
gaatgtgatagaaacgttcgtcataaaatcagtcaagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggag |
569 |
Q |
| |
|
| | |||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| || |
|
|
| T |
40629528 |
ggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaagagctggagaag |
40629429 |
T |
|
| Q |
570 |
atccgaaagaggatgagagacatctctcagaaaataatgaatttaaacttggatgttagtgtctc |
634 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
40629428 |
atccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagtatctc |
40629364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 330 - 600
Target Start/End: Original strand, 40656049 - 40656319
Alignment:
| Q |
330 |
aggcacgtagagtggattgagaaagagctgaggtcaatgcggggattgttagaacaggttgagcagcgcggggatggagaacaggaacaagagttgaaag |
429 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||| ||||||||| ||||||| | |||||| | | | |||||||| ||||||||||| || | |
|
|
| T |
40656049 |
aggcacgtagaatggattgaaagagagctgaggtcaatgcagggattgttggaacaggccgggcagcgtgcgtacggagaacaagaacaagagtttaatg |
40656148 |
T |
|
| Q |
430 |
aatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgttcgtcataaaatcagtcaagaggaggaggtggggtgttttgca |
529 |
Q |
| |
|
| |||| |||||||||||||| |||||| |||||| || |||||||||||||||| || || ||||| || || |||||||| ||||| ||| || | |
|
|
| T |
40656149 |
agtgggaagagaagttgaaggaagttgctggtgatgcagaggatgtgatagaaacgtttgtgatcaaatcggtgaaaaggaggagatggggagttctgta |
40656248 |
T |
|
| Q |
530 |
ttggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgagagacatctctcaga |
600 |
Q |
| |
|
|||| ||| ||| |||| ||||| |||||| || || ||||||| | ||||||||||||||||||||||| |
|
|
| T |
40656249 |
ttggattgacaaacacaaggttgggaaagagttgcagaagatccgcaggaggatgagagacatctctcaga |
40656319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University