View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_10 (Length: 480)

Name: NF8208A_low_10
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_10
NF8208A_low_10
[»] chr3 (4 HSPs)
chr3 (136-196)||(34228251-34228311)
chr3 (136-193)||(48252267-48252324)
chr3 (143-195)||(31472049-31472101)
chr3 (129-196)||(41287876-41287942)
[»] chr8 (6 HSPs)
chr8 (136-194)||(4989755-4989813)
chr8 (136-196)||(34085199-34085259)
chr8 (149-215)||(18200655-18200721)
chr8 (136-189)||(10451959-10452012)
chr8 (149-196)||(3347504-3347551)
chr8 (163-193)||(15869007-15869037)
[»] chr4 (17 HSPs)
chr4 (136-194)||(16831096-16831154)
chr4 (136-194)||(2908206-2908264)
chr4 (135-195)||(48524552-48524612)
chr4 (149-196)||(34458793-34458840)
chr4 (136-191)||(55090840-55090895)
chr4 (136-206)||(32325084-32325154)
chr4 (143-184)||(48400945-48400986)
chr4 (149-198)||(53145202-53145251)
chr4 (136-196)||(28299283-28299343)
chr4 (136-195)||(53142841-53142900)
chr4 (149-195)||(34236253-34236299)
chr4 (129-191)||(37992906-37992967)
chr4 (139-193)||(45921335-45921389)
chr4 (136-193)||(4860177-4860234)
chr4 (129-194)||(40298025-40298089)
chr4 (50-109)||(37992827-37992887)
chr4 (129-189)||(50101280-50101339)
[»] chr7 (6 HSPs)
chr7 (136-194)||(24937891-24937949)
chr7 (149-194)||(28664542-28664587)
chr7 (136-182)||(1112159-1112205)
chr7 (136-198)||(8656355-8656417)
chr7 (129-187)||(47537479-47537536)
chr7 (136-196)||(39786445-39786505)
[»] chr5 (9 HSPs)
chr5 (136-194)||(3600170-3600228)
chr5 (149-193)||(15139166-15139210)
chr5 (136-195)||(16802087-16802146)
chr5 (136-194)||(6102888-6102946)
chr5 (140-194)||(29552389-29552443)
chr5 (165-194)||(5471314-5471343)
chr5 (136-189)||(12036308-12036361)
chr5 (149-194)||(34346955-34347000)
chr5 (136-197)||(35290697-35290758)
[»] chr2 (7 HSPs)
chr2 (135-193)||(13835895-13835953)
chr2 (136-194)||(1870489-1870547)
chr2 (136-182)||(5444499-5444545)
chr2 (150-196)||(18857508-18857554)
chr2 (136-198)||(29525667-29525729)
chr2 (136-178)||(33635573-33635615)
chr2 (139-195)||(13618234-13618290)
[»] chr6 (3 HSPs)
chr6 (152-193)||(9213040-9213081)
chr6 (136-191)||(6770894-6770949)
chr6 (129-196)||(32800259-32800325)
[»] chr1 (7 HSPs)
chr1 (136-194)||(31160786-31160844)
chr1 (136-196)||(27558-27618)
chr1 (136-194)||(11065862-11065920)
chr1 (149-195)||(39993451-39993497)
chr1 (149-194)||(34382628-34382673)
chr1 (149-182)||(41936218-41936251)
chr1 (140-196)||(48375305-48375361)
[»] scaffold0299 (1 HSPs)
scaffold0299 (136-197)||(18008-18069)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 34228311 - 34228251
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    |||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||    
T  34228311 aaaagtcaaaatttatatttttaagacaaattttttatttatagtttccttaaccattgtc 34228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 48252324 - 48252267
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    |||||||||||  ||||||||||| | ||||||||||||||||| || ||||||||||    
T  48252324 aaaagtcaaaacttatattttcaagataaattttttatttatagattccttaaccatt 48252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 31472101 - 31472049
Alignment:
Q  143 aaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| | ||||||    
T  31472101 aaaatttatattttcaaaataaattttttatttatagttttcttcatcattgt 31472049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 41287942 - 41287876
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||||||||| ||||||  |||||||| || ||||||||| |||||||||||| ||||| |||||||    
T  41287942 ttaatcaaaaa-tcaaaacttatatttttaaaacaaattttctatttatagtttccttaatcattgtc 41287876  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 4989755 - 4989813
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  4989755 aaaaatcaaaacttatattttcaagacaaattttttatttatagttttcttaaccattg 4989813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 34085259 - 34085199
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    |||||||||||  ||||||||||| |||||||||||||||||   ||||||||||||||||    
T  34085259 aaaagtcaaaacttatattttcaaaacaaattttttatttatgaatttcttaaccattgtc 34085199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 18200721 - 18200655
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgtcttcaagacaccgattagca 215  Q
    |||||||| || ||||| ||||||||| ||| ||||||||||||| |||| | ||||||||||||||    
T  18200721 tatatttttaagacaaaatttttatttgtagatttcttaaccattatcttgaggacaccgattagca 18200655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 10451959 - 10452012
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 189  Q
    |||||||||||  |||||||| |||||||| |||||||||||||||| ||||||    
T  10451959 aaaagtcaaaacttatatttttaatacaaaatttttatttatagtttccttaac 10452012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 3347551 - 3347504
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||||||||| ||||| ||||||||| ||| ||||||||||||||||    
T  3347551 tatattttcaagacaaaatttttatttgtagatttcttaaccattgtc 3347504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 15869037 - 15869007
Alignment:
Q  163 aaattttttatttatagttttcttaaccatt 193  Q
    |||||||||||||||||||||||||||||||    
T  15869037 aaattttttatttatagttttcttaaccatt 15869007  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 16831154 - 16831096
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||    
T  16831154 aaaagtcaaaatttatatttttaaaacaaattttatatttatagttttcttaaccattg 16831096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 2908264 - 2908206
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||| ||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  2908264 aaaaatcaaaatttatattttcaagacaaattttctatttatagtttccttaaccattg 2908206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 48524552 - 48524612
Alignment:
Q  135 aaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  48524552 aaaaaatcaaaacttatattttctatacaaattttttatttatagtttgcttaatcattgt 48524612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 34458840 - 34458793
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  34458840 tatattttcaagacaaatttttcatttatggttttcttaaccattgtc 34458793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 55090840 - 55090895
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 191  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||| ||||||||    
T  55090840 aaaagtcaaaacttatattttcaagacaaatttttcatttatagtttccttaacca 55090895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 32325084 - 32325154
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtcttcaagacac 206  Q
    |||||||||||  ||||||||||| ||||||||||||| |||||||||  ||| ||||||| | |||||||    
T  32325084 aaaagtcaaaaattatattttcaagacaaattttttatctatagttttagtaagcattgtcatgaagacac 32325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 48400945 - 48400986
Alignment:
Q  143 aaaatatatattttcaatacaaattttttatttatagttttc 184  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  48400945 aaaatttatattttcaaaacaaattttttatttatagttttc 48400986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 53145202 - 53145251
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgtctt 198  Q
    ||||||||||  | |||||||||||||||||||| |||||||||||||||    
T  53145202 tatattttcatgataaattttttatttatagtttccttaaccattgtctt 53145251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 28299343 - 28299283
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||| |||||  ||||||||||||| ||||||| |||||||| ||| |||||||||||||    
T  28299343 aaaagacaaaacttatattttcaatataaattttctatttataatttccttaaccattgtc 28299283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 53142841 - 53142900
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    |||||| ||||  ||||||||||  ||||||||||||||||||| || ||||||||||||    
T  53142841 aaaagttaaaacttatattttcatgacaaattttttatttatagcttccttaaccattgt 53142900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 34236253 - 34236299
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    ||||||||||  ||||||||||||||||||||||  |||||||||||    
T  34236253 tatattttcaggacaaattttttatttatagtttctttaaccattgt 34236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 37992906 - 37992967
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 191  Q
    ||||||||||| ||||||| ||||||||||| |||||| || ||||||||| ||| |||||||    
T  37992906 ttaatcaaaaa-tcaaaatttatattttcaaaacaaatcttctatttatagattttttaacca 37992967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 45921389 - 45921335
Alignment:
Q  139 agtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    ||||||||  ||||||||||| ||||||||| ||||||||| || ||||||||||    
T  45921389 agtcaaaacttatattttcaagacaaattttctatttatagattccttaaccatt 45921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 4860177 - 4860234
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    |||||||||||  ||||||||||| ||||||||| ||||| || ||| ||||||||||    
T  4860177 aaaagtcaaaacttatattttcaaaacaaattttctatttgtaatttccttaaccatt 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 40298025 - 40298089
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    ||||||||||| ||||||  ||||||||||| | ||||||| ||||||||||||  ||||||||||    
T  40298025 ttaatcaaaaa-tcaaaacttatattttcaaaataaattttctatttatagtttcattaaccattg 40298089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 37992827 - 37992887
Alignment:
Q  50 gagaatgctaaagtgtgtcctcatggcattggttaaacaatc-aaacaagtaactttttat 109  Q
    ||||||||||||  ||| ||||||| |||  ||||||||||| ||||||||||||||||||    
T  37992827 gagaatgctaaacggtgccctcatgacatcagttaaacaatcaaaacaagtaactttttat 37992887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 50101339 - 50101280
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 189  Q
    ||||||||||| ||||||  |||||||| || ||||||||||||||||||| ||| |||||    
T  50101339 ttaatcaaaaa-tcaaaacttatatttttaagacaaattttttatttatagattttttaac 50101280  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 24937891 - 24937949
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||||||| |||||||| || ||||||||| |||||||||||| |||||||||||    
T  24937891 aaaagtcaaaatctatatttttaaaacaaattttctatttatagtttccttaaccattg 24937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 28664587 - 28664542
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||    
T  28664587 tatattttcaatacaaattttctatttatagattccttaaccattg 28664542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 1112205 - 1112159
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttt 182  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||||    
T  1112205 aaaagtcaaaatttataatttcaaaacaaattttctatttatagttt 1112159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 8656355 - 8656417
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtctt 198  Q
    |||||| ||||  ||| |||| || ||||||||| |||||||||||| |||||||||||||||    
T  8656355 aaaagttaaaacttatttttttaagacaaattttctatttatagtttccttaaccattgtctt 8656417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 47537479 - 47537536
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttctta 187  Q
    ||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  47537479 ttaatcaaaaa-tcaaaacttatattttcaagacaaatttttcatttatagtttcctta 47537536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 39786505 - 39786445
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    |||||| ||||  ||||||||||| |||| |||| ||||||||| || |||||||||||||    
T  39786505 aaaagttaaaacttatattttcaagacaagttttctatttatagattccttaaccattgtc 39786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 3600170 - 3600228
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||| ||||||  ||||||||||| |||||| |||||||||||||||||||||||||||    
T  3600170 aaaattcaaaacttatattttcaagacaaatattttatttatagttttcttaaccattg 3600228  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 15139210 - 15139166
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  15139210 tatattttcaagacaaattttttatttatagtttccttaaccatt 15139166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 16802087 - 16802146
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||  | |||||||||    
T  16802087 aaaagtcaaaatttatattttcaagacaaattttctatttatagtttcatgaaccattgt 16802146  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 6102888 - 6102946
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||||||  |||||||| || ||||||||| ||||||||| || |||||||||||    
T  6102888 aaaagtcaaaacttatattttgaagacaaattttctatttatagattccttaaccattg 6102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 29552389 - 29552443
Alignment:
Q  140 gtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||| ||||||| | | ||||||||| |||||||||||| |||||||||||    
T  29552389 gtcaaaatttatatttacgaaacaaattttctatttatagtttccttaaccattg 29552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 5471314 - 5471343
Alignment:
Q  165 attttttatttatagttttcttaaccattg 194  Q
    ||||||||||||||||||||||||||||||    
T  5471314 attttttatttatagttttcttaaccattg 5471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 12036361 - 12036308
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 189  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||| || ||||||    
T  12036361 aaaagtcaaaacttatattttcaagacaaattttctatttataggttccttaac 12036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 34346955 - 34347000
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    ||||||||||| ||||||||||||||| ||| || |||||||||||    
T  34346955 tatattttcaagacaaattttttatttgtagattccttaaccattg 34347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 35290697 - 35290758
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtct 197  Q
    ||||||||||| ||||||||| || ||||||||| || |||||| || ||||| ||||||||    
T  35290697 aaaagtcaaaacatatatttttaagacaaattttctaattatagattacttaatcattgtct 35290758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 13835895 - 13835953
Alignment:
Q  135 aaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    ||||||||||||  ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  13835895 aaaaagtcaaaacttatattttcaagacagattttctatttatagttttcttaaccatt 13835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 1870547 - 1870489
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    ||||||||||   ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  1870547 aaaagtcaaagcttatattttcaagacaaattttctatttatagtttccttaaccattg 1870489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 5444545 - 5444499
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttt 182  Q
    |||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  5444545 aaaagtcaaaacttatattttcaagacaaaatttttatttatagttt 5444499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 18857508 - 18857554
Alignment:
Q  150 atattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||||| || ||||| |||||||||||||||||||||| |||||||    
T  18857508 atatttttaagacaaactttttatttatagttttcttaatcattgtc 18857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 29525667 - 29525729
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtctt 198  Q
    |||||||||||| ||||||||  | | ||| ||||||||||||| ||||||||||||| ||||    
T  29525667 aaaagtcaaaatttatatttttgagataaaatttttatttatagatttcttaaccattatctt 29525729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 33635573 - 33635615
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttata 178  Q
    |||||||||||| ||||||||||| |||||||||| |||||||    
T  33635573 aaaagtcaaaatttatattttcaagacaaatttttcatttata 33635615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 13618234 - 13618290
Alignment:
Q  139 agtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    ||||||||  |||||||| || |||| |||| |||||||| ||||||||||||||||    
T  13618234 agtcaaaacttatatttttaagacaatttttatatttataattttcttaaccattgt 13618290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 9213081 - 9213040
Alignment:
Q  152 attttcaatacaaattttttatttatagttttcttaaccatt 193  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  9213081 attttcaagacaaattttttatttatagttttcttaaccatt 9213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 6770894 - 6770949
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 191  Q
    |||||||||||| ||||||||||| | ||||||| |||||||||||| ||||||||    
T  6770894 aaaagtcaaaatttatattttcaagataaattttctatttatagtttccttaacca 6770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 32800259 - 32800325
Alignment:
Q  129 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    ||||||||||| ||||||  |||||||| || ||||||||| |||||||||||| |||||||||||||    
T  32800259 ttaatcaaaaa-tcaaaacttatatttttaagacaaattttctatttatagtttccttaaccattgtc 32800325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 31160786 - 31160844
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||||||| |||||||| || ||||||||| |||||||| ||| |||||||||||    
T  31160786 aaaagtcaaaatttatatttttaagacaaattttctatttatattttccttaaccattg 31160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 27558 - 27618
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    |||||||||||  |||||||| || |||||||||||||||||||||  ||||| |||||||    
T  27558 aaaagtcaaaacttatattttaaagacaaattttttatttatagttcccttaatcattgtc 27618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 11065920 - 11065862
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||||||  ||||||||||| | ||||||| || ||||||||| |||||||||||    
T  11065920 aaaagtcaaaacttatattttcaagagaaattttataattatagtttccttaaccattg 11065862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 39993451 - 39993497
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattgt 195  Q
    ||||||||||| ||||| ||||||||| ||| |||||||||||||||    
T  39993451 tatattttcaagacaaaatttttatttgtagatttcttaaccattgt 39993497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 34382673 - 34382628
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttttcttaaccattg 194  Q
    |||||||| || | |||||||||||||||||||||||||| |||||    
T  34382673 tatatttttaagataaattttttatttatagttttcttaatcattg 34382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 41936218 - 41936251
Alignment:
Q  149 tatattttcaatacaaattttttatttatagttt 182  Q
    ||||||||||| ||||||||||||||||||||||    
T  41936218 tatattttcaagacaaattttttatttatagttt 41936251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 48375305 - 48375361
Alignment:
Q  140 gtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 196  Q
    |||||||  ||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  48375305 gtcaaaacttatattttctagacaatttttatatttatagttttcttaactattgtc 48375361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 18069 - 18008
Alignment:
Q  136 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtct 197  Q
    |||||||||||  |||||||| || | ||||||| |||||||||||| |||||||| |||||    
T  18069 aaaagtcaaaacttatatttttaagataaattttctatttatagtttccttaaccaatgtct 18008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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